View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8114_high_1 (Length: 452)
Name: NF8114_high_1
Description: NF8114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8114_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 131 - 415
Target Start/End: Original strand, 30831635 - 30831916
Alignment:
| Q |
131 |
atctacagagtttactatagtgtgtttaatgaattttaattgcacaaaaagaaaattttagttttgtttgatatctgtgaattaatttgtttattactac |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30831635 |
atctacagagtttactatagtgtgtttaatgaattttaattgcacagaaagaaaattttagttttgtttgatatctgtgaattaatttgtttattact-- |
30831732 |
T |
|
| Q |
231 |
tttgaactgtatatggaactatcgttcttatacatttatgtatgattttgcttttacatagtttttatcatcatttaataatttcatgttcatcttgttg |
330 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30831733 |
-ttgaactatatatggaactattgttcttatacatttatgtatgattttgcttttacatagtttttatcatcatttaataatttcatgttcatcttgttg |
30831831 |
T |
|
| Q |
331 |
atttcaacttgtatcatctgaaatcaacgccctttttgttgaaattggattcccttgacggaagggaaaatacgcatgcagaaca |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30831832 |
atttcaacttgtatcatctgaaatcaacgccctttttgttgaaattggattcccttgacgggagggaaaatacgcatgcagaaca |
30831916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 30831516 - 30831607
Alignment:
| Q |
19 |
atgtcatggagtgtttcacctctaagatcccctgctgaagagagtttc------ttgttattgggattgatttagggttcttaaggttgatg |
104 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30831516 |
atgtcatggagtggttcacctctaagatcccctgctgaagatagtttcttgttattgttattgggattgatttagggttcttaaggttgatg |
30831607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University