View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8114_low_1 (Length: 537)

Name: NF8114_low_1
Description: NF8114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8114_low_1
NF8114_low_1
[»] chr7 (6 HSPs)
chr7 (17-448)||(18920422-18920853)
chr7 (285-332)||(17175273-17175320)
chr7 (294-348)||(31292546-31292600)
chr7 (277-328)||(8562614-8562666)
chr7 (278-330)||(21934043-21934095)
chr7 (294-322)||(47667910-47667938)
[»] chr5 (3 HSPs)
chr5 (17-335)||(17306161-17306478)
chr5 (17-336)||(17273296-17273610)
chr5 (17-100)||(17289662-17289745)
[»] chr1 (3 HSPs)
chr1 (285-323)||(10005448-10005486)
chr1 (294-322)||(41945905-41945933)
chr1 (294-322)||(42677693-42677721)
[»] chr6 (1 HSPs)
chr6 (295-332)||(17912664-17912701)
[»] chr4 (2 HSPs)
chr4 (294-323)||(9475972-9476001)
chr4 (200-260)||(47561158-47561219)
[»] scaffold0690 (1 HSPs)
scaffold0690 (280-332)||(2642-2694)


Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 18920853 - 18920422
Alignment:
Q  17 gagataaggagtgtgagagtgagagagactgcgatgagggctttcaactcgattatggaaacgccgattgggtgaattggaagcggaacaggaaaagaca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18920853 gagataaggagtgtgagagtgagagagactgcgatgagggctttcaactcggttatggaaacgtcgattgggtgaattggaagcggaacaggaaaagaca 18920754  T
Q  117 ataaaaagagatgaagttgaaattgaaaattgcatgaaacgccatgttagaagagcctgagggaaggaaggaccatgctcgactagtggagagggtgggc 216  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18920753 ataaaaagagatgaagttgaaattgaaaattgcatgaaacaccatgttagaagagcctgagggaaggaaggaccatgctcgactagtggagagggtgggc 18920654  T
Q  217 cattttggatttttcttttatacaaggggtgttttagtattttcnnnnnnnnnnnnnnnnttgttttgtttttaggagggtgggccgtggcccacctcag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||| ||||||||||||||||||||||||||    
T  18920653 cattttggatttttcttttatacaaggggtgttttagtattttcaaaaagaaagaaaaaattgttttgtttttgggagggtgggccgtggcccacctcag 18920554  T
Q  317 cccataccaagctccgtcaccgatgatgattggatgagggtgaataaaaatgagtttgtttttggggtatgtaaaagagggaagaaattcattgagattg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18920553 cccataccaagctccgtcaccgatgatgattggatgagggtgaataaaaatgagtttgtttttggggtatgtaaaagagggaagaaattcattgagattg 18920454  T
Q  417 ttgttgttgctattactactagcttatgttgt 448  Q
    ||||||||||||||||||||||||||||||||    
T  18920453 ttgttgttgctattactactagcttatgttgt 18920422  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 17175273 - 17175320
Alignment:
Q  285 tttttaggagggtgggccgtggcccacctcagcccataccaagctccg 332  Q
    ||||| || |||||| ||||||||||||||||||||||| ||||||||    
T  17175273 ttttttggggggtggaccgtggcccacctcagcccatactaagctccg 17175320  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 31292600 - 31292546
Alignment:
Q  294 gggtgggccgtggcccacctcagcccataccaagctccgtcaccgatgatgattg 348  Q
    |||||||||||||||||||||||||||||| |  || || ||||||| |||||||    
T  31292600 gggtgggccgtggcccacctcagcccatactatccttcgccaccgatcatgattg 31292546  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 8562614 - 8562666
Alignment:
Q  277 ttgttttgtttttagga-gggtgggccgtggcccacctcagcccataccaagc 328  Q
    ||||||||||||| ||| ||||||| |||||||||||| ||||||||| ||||    
T  8562614 ttgttttgtttttcggatgggtgggtcgtggcccaccttagcccatacaaagc 8562666  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 21934043 - 21934095
Alignment:
Q  278 tgttttgtttttaggagggtgggccgtggcccacctcagcccataccaagctc 330  Q
    |||||||||||  || ||||||||| |||||||||| ||||||||| ||||||    
T  21934043 tgttttgttttggggtgggtgggccatggcccaccttagcccatacaaagctc 21934095  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 322
Target Start/End: Original strand, 47667910 - 47667938
Alignment:
Q  294 gggtgggccgtggcccacctcagcccata 322  Q
    |||||||||||||||||||||||||||||    
T  47667910 gggtgggccgtggcccacctcagcccata 47667938  T

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Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 17306161 - 17306478
Alignment:
Q  17 gagataaggagtgtgagagtgagagagactgcgatgagggctttcaactcgattatggaaacgccgattgggtgaattggaagcggaacaggaaaagaca 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||| ||||    
T  17306161 gagataaggagtgtgagagtgagagagactacgatgagggctttcaactcagttatggcaacgccgattgggtgaattggaagcggaacaggaaacgaca 17306260  T
Q  117 ataaaaagagatgaagttgaaattgaaaattgcatgaaacgccatgttagaagagcctgagggaaggaaggaccatgctcgactagtggagagggtgggc 216  Q
    ||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||    
T  17306261 ataaaaagagatggagttgaaattgaaaattgaatgaaacaccatgttagaagagccagagggaatgaaggatcatgctcggctagtggagagggtgggc 17306360  T
Q  217 cattttggatttttcttttatacaaggggtgttttagtattttcnnnnnnnnnnnnnnnnttgttttgtttttaggagggtgggccgtggcccacctcag 316  Q
    ||||||||||||||||||||||||| ||||||||||||||||||                ||||||||||||| ||||||||||||||||||||||||||    
T  17306361 cattttggatttttcttttatacaaagggtgttttagtattttc-cttatagaaaaaattttgttttgtttttgggagggtgggccgtggcccacctcag 17306459  T
Q  317 cccataccaagctccgtca 335  Q
    |||||||||||||||||||    
T  17306460 cccataccaagctccgtca 17306478  T

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Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 17273296 - 17273610
Alignment:
Q  17 gagataaggagtgtgagagtgagagagactgcgatgagggctttcaactcgattatggaaacgccgattgggtgaattggaagcggaacaggaaaagaca 116  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |||     
T  17273296 gagataaggagtgtgagag--agagagactgcgatgagggctttcaactcggttatggcaacgccgattgggtgaatttgaagcggaacaggaaacgacg 17273393  T
Q  117 ataaaaagagatgaagttgaaattgaaaattgcatgaaacgccatgttagaagagcctgagggaaggaaggaccatgctcgactagtggagagggtgggc 216  Q
     ||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17273394 gtaaaa-gagatgaagttgaaattgaaaattgaatgaaacaccatgttagaagagcctgagggaaggaaggaccatgctcggctagtggagagggtgggc 17273492  T
Q  217 cattttggatttttcttttatacaaggggtgttttagtattttcnnnnnnnnnnnnnnnnttgttttgtttttaggagggtgggccgtggcccacctcag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||| |||||||||||||||||| | |||||    
T  17273493 cattttggatttttcttttatacaaggggtgttttagtattttc--cttatagaaaaaaattgttttgtttttgggagggtgggccgtggccaagctcag 17273590  T
Q  317 cccataccaagctccgtcac 336  Q
    ||||||||||||||||||||    
T  17273591 cccataccaagctccgtcac 17273610  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 17289662 - 17289745
Alignment:
Q  17 gagataaggagtgtgagagtgagagagactgcgatgagggctttcaactcgattatggaaacgccgattgggtgaattggaagc 100  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| |||  ||||||||||||||||||||    
T  17289662 gagataaggagtgcgagagggagagagactgcgatgagggctttcaactcggttatggcaacatcgattgggtgaattggaagc 17289745  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 323
Target Start/End: Complemental strand, 10005486 - 10005448
Alignment:
Q  285 tttttaggagggtgggccgtggcccacctcagcccatac 323  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  10005486 tttttaggggggtgggccgtggcccacctcagcccatac 10005448  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 322
Target Start/End: Complemental strand, 41945933 - 41945905
Alignment:
Q  294 gggtgggccgtggcccacctcagcccata 322  Q
    |||||||||||||||||||||||||||||    
T  41945933 gggtgggccgtggcccacctcagcccata 41945905  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 322
Target Start/End: Complemental strand, 42677721 - 42677693
Alignment:
Q  294 gggtgggccgtggcccacctcagcccata 322  Q
    |||||||||||||||||||||||||||||    
T  42677721 gggtgggccgtggcccacctcagcccata 42677693  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 17912664 - 17912701
Alignment:
Q  295 ggtgggccgtggcccacctcagcccataccaagctccg 332  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  17912664 ggtgggccgtggtccacctcagcccatactaagctccg 17912701  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 9475972 - 9476001
Alignment:
Q  294 gggtgggccgtggcccacctcagcccatac 323  Q
    ||||||||||||||||||||||||||||||    
T  9475972 gggtgggccgtggcccacctcagcccatac 9476001  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 47561158 - 47561219
Alignment:
Q  200 tagtggagagggtgggccattttggatttttcttttat-acaaggggtgttttagtattttc 260  Q
    |||||||||||||| ||| ||||| |||||||||| || |||| | ||||||||||||||||    
T  47561158 tagtggagagggtgagccgttttgtatttttctttaataacaaagagtgttttagtattttc 47561219  T

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Target: scaffold0690 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 2694 - 2642
Alignment:
Q  280 ttttgtttttaggagggtgggccgtggcccacctcagcccataccaagctccg 332  Q
    ||||| |||| || ||||||||||||| |||||| ||||||||| ||||||||    
T  2694 ttttgcttttgggtgggtgggccgtggtccaccttagcccatacaaagctccg 2642  T

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