View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8114_low_4 (Length: 299)
Name: NF8114_low_4
Description: NF8114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8114_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 5502969 - 5502691
Alignment:
| Q |
1 |
gaagtttatctctcatgtcatatagaaaattgaaatatgcatgtctccaagacccctttaatatcaagcttccacacacaatccagaagccagtaatata |
100 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
5502969 |
gaagtttatctctcaggtcatatacaaaattgaaatatgcatgtctccaagacctctttaacaccaagcttccacacacaatccagaagccagtaatata |
5502870 |
T |
|
| Q |
101 |
cccgactgctatgcttgcatataatcccaatctttcattgtcgtcatctccatctacgccatcttcagcttttctgtcttgctctccatttccagttgac |
200 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||| |||||||||||||| |||| |
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| T |
5502869 |
cccgacaactatgcttgtgtataatcccaatctttcattgtcgtcatcgctatctacaccatcttcatgttttctgtctttctctccatttccaggtgac |
5502770 |
T |
|
| Q |
201 |
aatgatgagcaattagttggcaaagggtgtccacaaagccctgggttgcctgcataaattgatggctcattgaaggtgg |
279 |
Q |
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||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
5502769 |
aatgatgagcaatcagttggcaaaggatgtccacaaagccccgggttgccttcataaattgatggctcattgaaggtgg |
5502691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 5 - 278
Target Start/End: Complemental strand, 5469388 - 5469118
Alignment:
| Q |
5 |
tttatctctcatgtcatatagaaaattgaaatatgcatgtctccaagacccctttaatatcaagcttccacacacaatccagaagccagtaatatacccg |
104 |
Q |
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||||||||| ||||||| | ||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5469388 |
tttatctcttgtgtcatacatgaaattgaaatacgcatgtctccaagacctctttaacatcaagcttccacacacaatccagaagccagtaatatacccg |
5469289 |
T |
|
| Q |
105 |
actgctatgcttgcatataatcccaatctttcattgtcgtcatctccatctacgccatcttcagcttttctgtcttgctctccatttccagttgacaatg |
204 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||| ||||| | ||||||||| |||| ||||||||||| ||||||| | |||||||| |
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| T |
5469288 |
actgctatgcttgcatataatcccaatctttcactgttgtcatcttcatctgcaccatcttcatgttttttgtcttgctctacatttcctggtgacaatg |
5469189 |
T |
|
| Q |
205 |
atgagcaattagttggcaaagggtgtccacaaagccctgggttgcctgcataaattgatggctcattgaaggtg |
278 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| |||||||| |||| |||| |||||||||||||| |
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| T |
5469188 |
atgagcaattagttggcaaaggatccccacaaagcccttggttgcctacata---tgatagctcattgaaggtg |
5469118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 5487152 - 5486878
Alignment:
| Q |
1 |
gaagtttatctctcatgtcatatagaaaattgaaatatgcatgtctccaagacccctttaatatcaagcttccacacacaatccagaagccagtaatata |
100 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||| ||||| ||||| |
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| T |
5487152 |
gaagtttatctctcatgtcatacaaaaaattgaaatatgcatgtctccaagacctctttaacaccaagcttccacacacaatccagaaaccagttatata |
5487053 |
T |
|
| Q |
101 |
cccgactgctatgcttgcatataatcccaatctttcattgtcgtcatctccatctacgccatcttcagcttttctgtcttgctctccatttccagttgac |
200 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||| | |||||||||||| ||||||||||||| | || |
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| T |
5487052 |
cccgatagctatgcttgcatacaatcccaatctttcattgtcatcatctccatcaacaccatctttatgttttctgtcttgttctccatttccaggtaac |
5486953 |
T |
|
| Q |
201 |
aatgatgagcaattagttggcaaagggtgtccacaaagccctgggttgcctgcataaattgatggctcattgaaggtg |
278 |
Q |
| |
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| ||||||||||||||| |||||||| || |||||||| |||| |||||| |||| |||| |||||||||||||| |
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| T |
5486952 |
attgatgagcaattagtcggcaaaggatggccacaaagtcctgcattgcctacata---tgatagctcattgaaggtg |
5486878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 5497925 - 5497712
Alignment:
| Q |
1 |
gaagtttatctctcatgtcatatagaaaattgaaatatgcatgtctccaagacccctttaatatcaagcttccacacacaatccagaagccagtaatata |
100 |
Q |
| |
|
||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
5497925 |
gaagtttatctttcatgtcatatacagaattgaaatatgcatgtctccaagacctctttaacatcaagcttccacacacaatccagaagccagtgatata |
5497826 |
T |
|
| Q |
101 |
cccgactgctatgcttgcatataatcccaatctttcattgtcgtcatctccatctacgccatcttcagcttttctgtcttgctctccatttccagttgac |
200 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||| |||||||||||| || ||||||||| ||| || ||||| ||||||| ||||| |||| |
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| T |
5497825 |
cccaactgctatgcttgcatataatccccatctttcattgttgtcatctccatcaacaccatcttcatgtttcctttcttgttctccatgtccaggtgac |
5497726 |
T |
|
| Q |
201 |
aatgatgagcaatt |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
5497725 |
aatgatgagcaatt |
5497712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 5492155 - 5491939
Alignment:
| Q |
1 |
gaagtttatctctcatgtcatatagaaaattgaaatatgcatgtctccaagacccctttaatatcaagcttccacacacaatccagaagccagtaatata |
100 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||| |
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|
| T |
5492155 |
gaagtttatctcttgtgtcatatacaaaattgaaatatgcatgtctccaagacctctttagcattaagcttccacacacaatccagaagccggtaatata |
5492056 |
T |
|
| Q |
101 |
cccgactgctatgcttgcatataatcccaatctttca---ttgtcgtcatctccatctacgccatcttcagcttttctgtcttgctctccatttccagtt |
197 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||| ||||| |||||| | | ||||| | |||| | ||||| ||||||||||||| |
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| T |
5492055 |
cccgactgctatgcttgcatataatccaaatctttcagccttgtcatcatccccatcttcactatcttgatgttttatttcttgttctccatttccaggc |
5491956 |
T |
|
| Q |
198 |
gacaatgatgagcaatt |
214 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
5491955 |
aacaatgatgagcaatt |
5491939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 270
Target Start/End: Complemental strand, 5479047 - 5478778
Alignment:
| Q |
2 |
aagtttatctctcatgtcatatagaaaattgaaatatgcatgtctccaagacccctttaatatcaagcttccacacacaatccagaagccagtaatatac |
101 |
Q |
| |
|
|||||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| |||||||| |||||| |
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| T |
5479047 |
aagtttatctctggtttcatatacaaaattgaaatatgcatgtctccaagacctctttaacatcatgcttccacacacaatccaaaagccagtgatatac |
5478948 |
T |
|
| Q |
102 |
ccgactgctatgcttgcatataatcccaatctttca---ttgtcgtcatctccatctacgccatcttcagcttttctgtcttgctctccatttccagttg |
198 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||| || || || || ||||| | ||||||| |||||| |||| |||||||||||| | |
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|
| T |
5478947 |
ccgacatctatgcttgcatataaccccaacctttcagtcttttcatcgtccccatcatcaccatctttgtattttctttcttcttctccatttccatgta |
5478848 |
T |
|
| Q |
199 |
acaatgatgagcaattagttggcaaagggtgtccacaaagccctgggttgcctgcataaattgatggctcat |
270 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||| |||| |||||||| |
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| T |
5478847 |
acaatgatgagcaattagttggc--agggtacccacaaagccccgggttgccttcatagattgctggctcat |
5478778 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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