View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8114_low_7 (Length: 229)

Name: NF8114_low_7
Description: NF8114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8114_low_7
NF8114_low_7
[»] chr8 (6 HSPs)
chr8 (71-214)||(34725589-34725732)
chr8 (71-152)||(38610305-38610386)
chr8 (71-152)||(38795090-38795171)
chr8 (21-70)||(44834819-44834868)
chr8 (72-139)||(34729722-34729789)
chr8 (76-139)||(34720424-34720487)
[»] chr1 (1 HSPs)
chr1 (14-69)||(45811184-45811239)
[»] chr4 (2 HSPs)
chr4 (21-70)||(30478772-30478821)
chr4 (21-69)||(48013428-48013476)
[»] chr2 (1 HSPs)
chr2 (21-70)||(19521804-19521853)
[»] chr3 (1 HSPs)
chr3 (21-67)||(25329849-25329895)
[»] chr5 (2 HSPs)
chr5 (21-69)||(26688629-26688677)
chr5 (21-69)||(26958360-26958408)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 34725732 - 34725589
Alignment:
Q  71 agtactgtcactatgctttctcatgactccaatttccattttacatccaaaatccttgcaaccaagagtgttaatccaggtttgccacatttttgtgctg 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34725732 agtactgtcactatgctttctcatgactccaatttccattttacatccaaaatccttgcaaccaagagtgttaatccaggtttgccacatttttgtgctg 34725633  T
Q  171 annnnnnnnaactcttgcaggtgtagaagatttcatgaactttt 214  Q
    |        |||||||||||||||||||||||||||||||||||    
T  34725632 attttttttaactcttgcaggtgtagaagatttcatgaactttt 34725589  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 38610386 - 38610305
Alignment:
Q  71 agtactgtcactatgctttctcatgactccaatttccattttacatccaaaatccttgcaaccaagagtgttaatccaggtt 152  Q
    |||||||||||||||||||||  ||| | |||| ||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  38610386 agtactgtcactatgctttctgttgatttcaatgtccattttacatccaaagtccttgcaaccaagagtatcaatccaggtt 38610305  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 38795171 - 38795090
Alignment:
Q  71 agtactgtcactatgctttctcatgactccaatttccattttacatccaaaatccttgcaaccaagagtgttaatccaggtt 152  Q
    |||||||||||||||||||||  ||| | |||| ||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  38795171 agtactgtcactatgctttctgttgatttcaatgtccattttacatccaaagtccttgcaaccaagagtatcaatccaggtt 38795090  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 44834819 - 44834868
Alignment:
Q  21 tttttccctttatccctcaatttcaacaacaacaacaattccactaacag 70  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44834819 ttttcccctttatccctcaatttcaacaacaacaacaattccactaacag 44834868  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 34729789 - 34729722
Alignment:
Q  72 gtactgtcactatgctttctcatgactccaatttccattttacatccaaaatccttgcaaccaagagt 139  Q
    |||||||||||||| ||||| |||| |||| | ||||||||||||||||| | |||||||||||||||    
T  34729789 gtactgtcactatgttttctgatgattccattgtccattttacatccaaagttcttgcaaccaagagt 34729722  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 34720487 - 34720424
Alignment:
Q  76 tgtcactatgctttctcatgactccaatttccattttacatccaaaatccttgcaaccaagagt 139  Q
    |||||||||||| ||| |||| ||| || ||||||||||||| ||| |||||| ||||||||||    
T  34720487 tgtcactatgctatctgatgattccgatgtccattttacatctaaagtccttgaaaccaagagt 34720424  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 45811239 - 45811184
Alignment:
Q  14 attatactttttccctttatccctcaatttcaacaacaacaacaattccactaaca 69  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45811239 attatatttttttcctttatccctcaatttcaacaacaacaacaattccactaaca 45811184  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 30478821 - 30478772
Alignment:
Q  21 tttttccctttatccctcaatttcaacaacaacaacaattccactaacag 70  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30478821 ttttcccctttatccctcaatttcaacaacaacaacaattccactaacag 30478772  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 48013428 - 48013476
Alignment:
Q  21 tttttccctttatccctcaatttcaacaacaacaacaattccactaaca 69  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48013428 ttttcccctttatccctcaatttcaacaacaacaacaattccactaaca 48013476  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 19521853 - 19521804
Alignment:
Q  21 tttttccctttatccctcaatttcaacaacaacaacaattccactaacag 70  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19521853 ttttcccctttatccctcaatttcaacaacaacaacaattccactaacag 19521804  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 25329895 - 25329849
Alignment:
Q  21 tttttccctttatccctcaatttcaacaacaacaacaattccactaa 67  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  25329895 ttttcccctttatccctcaatttcaacaacaacaacaattccactaa 25329849  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 26688677 - 26688629
Alignment:
Q  21 tttttccctttatccctcaatttcaacaacaacaacaattccactaaca 69  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||    
T  26688677 ttttcccctttatccgtcaatttcaacaacaacaacaattccactaaca 26688629  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 26958408 - 26958360
Alignment:
Q  21 tttttccctttatccctcaatttcaacaacaacaacaattccactaaca 69  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||    
T  26958408 ttttcccctttatccgtcaatttcaacaacaacaacaattccactaaca 26958360  T

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