View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8114_low_9 (Length: 226)

Name: NF8114_low_9
Description: NF8114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8114_low_9
NF8114_low_9
[»] chr7 (3 HSPs)
chr7 (154-212)||(14820161-14820219)
chr7 (154-212)||(15267161-15267219)
chr7 (154-212)||(15273946-15274004)
[»] chr5 (1 HSPs)
chr5 (154-212)||(17502500-17502558)


Alignment Details
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 14820219 - 14820161
Alignment:
Q  154 gggtaacaggatcaaaagcaagaaatcataaaatgaataatcaaagggttgttaaacat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14820219 gggtaacaggatcaaaagcaagaaatcataaaatgaataatcaaagggttgttaaacat 14820161  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 15267219 - 15267161
Alignment:
Q  154 gggtaacaggatcaaaagcaagaaatcataaaatgaataatcaaagggttgttaaacat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15267219 gggtaacaggatcaaaagcaagaaatcataaaatgaataatcaaagggttgttaaacat 15267161  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 15274004 - 15273946
Alignment:
Q  154 gggtaacaggatcaaaagcaagaaatcataaaatgaataatcaaagggttgttaaacat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15274004 gggtaacaggatcaaaagcaagaaatcataaaatgaataatcaaagggttgttaaacat 15273946  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 17502500 - 17502558
Alignment:
Q  154 gggtaacaggatcaaaagcaagaaatcataaaatgaataatcaaagggttgttaaacat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17502500 gggtaacaggatcaaaagcaagaaatcataaaatgaataatcaaagggttgttaaacat 17502558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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