View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8115_high_1 (Length: 628)
Name: NF8115_high_1
Description: NF8115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8115_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 551; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 16 - 611
Target Start/End: Complemental strand, 35126817 - 35126222
Alignment:
| Q |
16 |
ggcccggcccacatcgcctttcacacaaagcccattgataagaatggtaaaagtcaccacagaaggctcaagaccaagttttaacatagtccccaacaca |
115 |
Q |
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| T |
35126817 |
ggcccggcccacatcgcctttcacacaaagcccattgataagaatggtaaaagtcaccacagaaggctcaagaccaagttttaacatagtccccaacaca |
35126718 |
T |
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| Q |
116 |
gaaaacccaaaagcaaccaactttaaatggcaaagtgaattgataacaacattaagaataaaagtatcaggctttatacctaaagaagaatgcatttctt |
215 |
Q |
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| T |
35126717 |
gaaaacccaaaagcaaccaactttaaatggcaaagtgaattgataacaacattaagaataaaagtatcaggctttatacctaaagaagaatgcatttctt |
35126618 |
T |
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| Q |
216 |
taactaaggatatagcagttgtgtaatgcttcatcttcacaataaaccctaataacaaagtaaagtctataacagaaggcaaagggttcattttagccat |
315 |
Q |
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| T |
35126617 |
taactaaagatatagcagttgtgtaatgcttcatcttcacaataaaccctaataacaaagtaaagtctataacagaaggcaaagggttcattttagccat |
35126518 |
T |
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| Q |
316 |
ggtatgnnnnnnntttaaagcttcatcaatgctcttcagtttacctgatttgcattggtttctcatgaaattcaggaactgggttttgttgctatgtgac |
415 |
Q |
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| T |
35126517 |
ggtatgaaaaaaatttaaagcttcatcaatgctcttcagtttacctgatttgcattggtttctcatgaaattcagaaactgggttttgttgctatgtgac |
35126418 |
T |
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| Q |
416 |
tgaatttcatgattaatgtttgttgatttggtgcaatgagagtgaagtggaatatgcaaagctggggaaggaaaaggagaggtggtagtaaacatgtggt |
515 |
Q |
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| T |
35126417 |
tgaatttcatgattaatgtttgttgatttggtgcaatgagagtgaagtggaatatgcaaagcaggagaaggaaaaggagaggtggtagtacacatgtggt |
35126318 |
T |
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| Q |
516 |
gaagaagacgaaaacaagagagaaaagagattcttcgaagcattcgggaaaattcatcaaaagtttacaatgacattacgtcgaacactttgtaag |
611 |
Q |
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| T |
35126317 |
gaagaagacgaaaacaagagagaaaagagattcttcgaagcattcgggaaaattcatcaaaagtttacaatgacattacgtcaaacactttgtaag |
35126222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 575 - 611
Target Start/End: Complemental strand, 35412096 - 35412060
Alignment:
| Q |
575 |
aaagtttacaatgacattacgtcgaacactttgtaag |
611 |
Q |
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| T |
35412096 |
aaagtttacaatgacattacgtcgaacactttgtaag |
35412060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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