View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8115_high_4 (Length: 359)
Name: NF8115_high_4
Description: NF8115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8115_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 163 - 352
Target Start/End: Original strand, 33363047 - 33363238
Alignment:
| Q |
163 |
agaaaacctaaaataaagtcaaagaaaatttttataaccaaaataagcctaagtggtcaaattgaattagggctacnnnnnnnnn--tctattttgagtg |
260 |
Q |
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| T |
33363047 |
agaaaacctaaaataaagtcaaagaaaaattttataaccaaaataagcctaagtggtcaaattgaattagggctacaaaaaaaaaaatctattttgagtg |
33363146 |
T |
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| Q |
261 |
catttacactattgttggttttgtgcagcactagaacaatgtaggtctaaaaatgcttcttctcattcttttttgaacaagacttcttctca |
352 |
Q |
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| T |
33363147 |
catttacactattgttggttttgtgcagcactagaacaatgtaggtctaaaaatgcttcttctcattcttttttgaacaagacttcttctca |
33363238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 33362901 - 33362998
Alignment:
| Q |
68 |
aaaaaatatattgatgctgagaatgtatttaatataattggattggatgatagatcagtcagtatattgacagcatacctgcatttctaaagtgtaga |
165 |
Q |
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| T |
33362901 |
aaaaaatatattgatgctgagaatgtatttaatataattggattggatgatagatcagtcagtatattgacagcatacatgcatttctaaagtgtaga |
33362998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 33362839 - 33362874
Alignment:
| Q |
19 |
acctatcagatcttgttatgaaaaatgaagacaata |
54 |
Q |
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| T |
33362839 |
acctatcagatcttgttatgaaaaatgaagacaata |
33362874 |
T |
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