View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8115_low_2 (Length: 482)
Name: NF8115_low_2
Description: NF8115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8115_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 11 - 467
Target Start/End: Complemental strand, 49951937 - 49951481
Alignment:
| Q |
11 |
ctgtgcgtgattgtgttgatctgttcaatgataacaaaatgtgacagatgctaagggggtgatgatgagtcatnnnnnnnnnnnnnnaatgtggtttgga |
110 |
Q |
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| T |
49951937 |
ctgtgtgtgattgtgttgatctgttcaatgataacaaaatgtgacagatgctaagggggtgatgatgagtcatgagagagagagagaaatgtggtttggt |
49951838 |
T |
|
| Q |
111 |
tttattttggtttttatgttaaatttttactacaacagtaactaaggacaccttttgagatcattcacacgctcagctactttggcttggagctgtggga |
210 |
Q |
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| T |
49951837 |
tttattttggtttttatgttaaatttttactacaacagtaactaaggacaccttttgagatcattcacacgctcagctactttggcttggagctgtggga |
49951738 |
T |
|
| Q |
211 |
tctatgggaattaacaaacgacaagttcgatatcaactgaaactttcctatcccctcgattttttccattttaattctaccttccttttgcattttaaac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49951737 |
tctatgggaattaacaaacgacaagttcgatatcaactgaaactttcctatcccctcgattttttccattttaattctaccttccttttgcattttaaac |
49951638 |
T |
|
| Q |
311 |
atggagaatgctaacaatttttcttgggtcacttttgttaatgaatcatatacaataaatataagtgggtagttagcgatctaaaagtctnnnnnnnnnn |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49951637 |
atggagaatgctaacaatttttcttgggtcacttttgttaatgaatcatatacaataaatataagtgggtagttagcgatctaaaagtctaaaaaacgca |
49951538 |
T |
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| Q |
411 |
nnnnntttaatacaaagtttattttttcccctactcgtataagtgctccaagaatgt |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49951537 |
aaaaatttaatacaaagtttattttttcccctactcgtataagtgctccaagaatgt |
49951481 |
T |
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