View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8115_low_3 (Length: 410)
Name: NF8115_low_3
Description: NF8115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8115_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 15 - 393
Target Start/End: Original strand, 46374481 - 46374859
Alignment:
| Q |
15 |
agaggaagtgtaagaagaaaataccgtgtttcagggttgacttctcaaccaacaagagaacttgtgtaagatacttttctcaaaaatcaaactagttata |
114 |
Q |
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| T |
46374481 |
agaggaagtgtaagaagaaaataccgtgtttcagggttgacttctcaaccaacaagagaacttgtgtaagatacttttctcaaaaatcaaactagttata |
46374580 |
T |
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| Q |
115 |
acaattttgaatttgatcaatttttaatgatgatttattactttaggtttcctgtggatgagaattcaacaatgaagtcagtagtcgaatactttcaaga |
214 |
Q |
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| T |
46374581 |
acgattttgaatttgatcaatttttaatgatgatttattactttaggtttcctgtggatgagaattcaacaatgaagtcagtagtcgaatactttcaaga |
46374680 |
T |
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| Q |
215 |
gatgtatggtttcactattcaatacacacaccttccttgccttcaagtaggcaaccaaaagaaggctaactacttacctatggaggtttggaaagcacct |
314 |
Q |
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| T |
46374681 |
gatgtatggtttcactattcaatacacacaccttccttgccttcaagtaggcaaccaaaagaaggctaactacttacctatggaggtttggaaagcacct |
46374780 |
T |
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| Q |
315 |
tgtaattgatgtaactattcaacttaatcggtgtttttgcttattctggtgttctattggttctccaggcgtgcaaaat |
393 |
Q |
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| T |
46374781 |
tgtaattgatgtaactattcaacttaatcggtgtttttgcttattctggtgttctattggttctccaggcatgcaaaat |
46374859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 15409114 - 15409220
Alignment:
| Q |
156 |
tttaggtttcctgtggatgagaattcaacaatgaagtcagtagtcgaatactttcaagagatgtatggtttcactattcaatacacacaccttccttgcc |
255 |
Q |
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| T |
15409114 |
tttaggtttcctgttgatgagaactcgactatgaaatcagtggttgaatacttccaagaaatgtatggtttcactattaaacatacacaccttccttgcc |
15409213 |
T |
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| Q |
256 |
ttcaagt |
262 |
Q |
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| T |
15409214 |
ttcaagt |
15409220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 15408961 - 15409030
Alignment:
| Q |
15 |
agaggaagtgtaagaagaaaataccgtgtttcagggttgacttctcaaccaacaagagaacttgtgtaag |
84 |
Q |
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| T |
15408961 |
agagggagtgttagaagaaagtatcgtgtttccggcataacttctcaaccaacaagagaacttgtgtaag |
15409030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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