View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8115_low_4 (Length: 406)
Name: NF8115_low_4
Description: NF8115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8115_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 49016640 - 49016269
Alignment:
| Q |
16 |
ggtgttaacagcacgcctacaaacccttgcatccttataaatcctgcctggtctacagaagtaacggtttttcggtgcacagtgagtatcttgtgagcat |
115 |
Q |
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| T |
49016640 |
ggtgttaacaccacgcctacaaacccttgcatccttataaatcctgcctggtctacagaagtaactgtttttcggtgcacagtgagtatcttgtgagcat |
49016541 |
T |
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| Q |
116 |
atacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactagagaaaagacctcgtg |
215 |
Q |
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| T |
49016540 |
atacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactagagaaaagacctcgtg |
49016441 |
T |
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| Q |
216 |
aatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatggattgctcccacaaatcctaagtttctatttttcccccaatgcggtaa |
315 |
Q |
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| T |
49016440 |
aatcatactcttctttaaccttcaaaaacttacctgctttcttatacttacggattgctcccacaaatcctaagtttctatttttcccccaatgtggtaa |
49016341 |
T |
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| Q |
316 |
ccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatgg |
387 |
Q |
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| T |
49016340 |
ccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatgg |
49016269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 30 - 387
Target Start/End: Original strand, 490128 - 490485
Alignment:
| Q |
30 |
gcctacaaacccttgcatccttataaatcctgcctggtctacagaagtaacggtttttcggtgcacagtgagtatcttgtgagcatatacacaacccttc |
129 |
Q |
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| T |
490128 |
gcctacaaacccttgcatccttatagattctgcctggtctgcagaagtagttcttttttggtgaacaatgactatcttttgagcatatacacaacccttc |
490227 |
T |
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| Q |
130 |
caatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactagagaaaagacctcgt-gaatcatactcttc |
228 |
Q |
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| T |
490228 |
caatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtctgtccaatcactagagaaaag-tctcttcgggtcatatttctt |
490326 |
T |
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| Q |
229 |
tttaaccttcaaaaacttacctgctttcttatacttatggattgctcccacaaatcctaagtttctatttttcccccaatgcggtaaccctccatatttg |
328 |
Q |
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| T |
490327 |
tttaaccttcaaaaacctatttgccttattatatttttttattgcccccacaaatcctatatttctattttttccccaatggggtaaccctccatatttg |
490426 |
T |
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| Q |
329 |
aacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatgg |
387 |
Q |
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| T |
490427 |
aacaatcctatttgttctatctcttcaattatatcttcataaagcctaggagtcaatgg |
490485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 102 - 380
Target Start/End: Complemental strand, 9072257 - 9071979
Alignment:
| Q |
102 |
tatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactaga |
201 |
Q |
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| T |
9072257 |
tatcttgtgaacaaatacacaaaccttctaatgcacacccatttttcaatattgtcacaccttcttttattccaagcacttgatccgtccatgtactaga |
9072158 |
T |
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| Q |
202 |
gaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatggattgctcccacaaatcctaagtttctatttttc |
301 |
Q |
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| T |
9072157 |
gaaaagtccttgtgaatcatatttctctttaaccttcaaaaatttctcaatatctttgtactttttgaaaactccttcaaatgccacatttctattctta |
9072058 |
T |
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| Q |
302 |
ccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggag |
380 |
Q |
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| T |
9072057 |
ccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggag |
9071979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 383
Target Start/End: Complemental strand, 9059350 - 9059260
Alignment:
| Q |
293 |
ctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtca |
383 |
Q |
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| T |
9059350 |
ctattcttcccccaatgaggcaaccctccatatttaaaaatccctatttgctcaatctcttcaaaaacgtcttcataaagcctaggagtca |
9059260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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