View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8115_low_6 (Length: 276)

Name: NF8115_low_6
Description: NF8115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8115_low_6
NF8115_low_6
[»] chr4 (3 HSPs)
chr4 (7-96)||(52712843-52712932)
chr4 (161-235)||(52713252-52713326)
chr4 (7-76)||(52718506-52718575)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 52712843 - 52712932
Alignment:
Q  7 tttggtatttgtgctgcagggttatatttggaatgttgattgcattgccaataacagtactctactatgtaattcttgcattattgtaag 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  52712843 tttggtatttgtgctgcagggttatatttggaatgttgattgcattgccaataacagtactccactatgtaattcttgcattactgtaag 52712932  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 52713252 - 52713326
Alignment:
Q  161 gtatcaattattatgagatcaagtccatataatcaaagcttcacacaactatacctatctatattgtagattaca 235  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52713252 gtatcaattattatgagataatgtccatataatcaaagcttcacacaactatacctatctatattgtagattaca 52713326  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 52718506 - 52718575
Alignment:
Q  7 tttggtatttgtgctgcagggttatatttggaatgttgattgcattgccaataacagtactctactatgt 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  52718506 tttggtatttgtgctgcagggttatatttggaatgttgattgcattgcccataacaatactctactatgt 52718575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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