View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8115_low_8 (Length: 241)
Name: NF8115_low_8
Description: NF8115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8115_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 31431508 - 31431717
Alignment:
| Q |
1 |
tgttggtatttggtattaattagtggcggttgtcctctaatttggaagaaaagnnnnnnnnngttttagaaaatatcgggtttttggttttccaactcaa |
100 |
Q |
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| T |
31431508 |
tgttggtatttggtatta----gtggcggttgtcctctaatttggaaaaaaa--------aagttttagaaaatatcgggtttttgtttttccaactcaa |
31431595 |
T |
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| Q |
101 |
ccacagaactttactatagctagttgcaataatgtgactcatatatgataacgtcaaccacttcttgtttgatgtaattttattatttggtggaggttac |
200 |
Q |
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| T |
31431596 |
cca--gaactttactatagctagttgcaataatgtgactcatatatgataacgtcaaccacttctcgtttgatgtaattttattatttggtggaggttac |
31431693 |
T |
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| Q |
201 |
aaatcattcaagatatattgaaaa |
224 |
Q |
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| T |
31431694 |
aaatcattcaagatatattgaaaa |
31431717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 224
Target Start/End: Complemental strand, 31446748 - 31446619
Alignment:
| Q |
92 |
ccaactcaaccacagaactttactatagctagttgcaataatgtgactcatatatgataacgtcaaccacttcttgtttgatgtaattttattatttggt |
191 |
Q |
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| T |
31446748 |
ccaactcaaccaca--actttattgtaacaaattgcaataatgtgacccatatatagtaacgtcaaccacttctcttttggtgcaaatttattatttggt |
31446651 |
T |
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| Q |
192 |
ggaggttacaaatcattcaagatatattgaaaa |
224 |
Q |
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| T |
31446650 |
ggagggtacaaatcatt-aagatatattgaaaa |
31446619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 14337559 - 14337666
Alignment:
| Q |
117 |
tagctagttgcaataatgtgactcatatatgataacgtcaaccacttcttgtttgatgtaattttattatttggtggaggttacaaatcattcaagatat |
216 |
Q |
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| T |
14337559 |
tagcaagttgcaataatgtgacccatatccgttaacgtcaaccacttatattttggtgcaaatgtattattttgtggatgatacaagccattgaagatat |
14337658 |
T |
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| Q |
217 |
attgaaaa |
224 |
Q |
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|||||||| |
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| T |
14337659 |
attgaaaa |
14337666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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