View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8115_low_9 (Length: 239)

Name: NF8115_low_9
Description: NF8115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8115_low_9
NF8115_low_9
[»] chr4 (10 HSPs)
chr4 (1-221)||(31148762-31148982)
chr4 (10-221)||(31157673-31157884)
chr4 (27-213)||(31503573-31503759)
chr4 (10-158)||(31028034-31028182)
chr4 (10-213)||(31526887-31527090)
chr4 (28-213)||(31498460-31498645)
chr4 (26-213)||(31471923-31472110)
chr4 (27-197)||(31478436-31478606)
chr4 (31-205)||(31484249-31484423)
chr4 (37-213)||(31491228-31491404)
[»] chr6 (8 HSPs)
chr6 (26-213)||(33058041-33058228)
chr6 (10-81)||(33272266-33272337)
chr6 (25-81)||(33286023-33286079)
chr6 (31-110)||(9167256-9167335)
chr6 (10-81)||(33304946-33305017)
chr6 (10-109)||(33359182-33359281)
chr6 (30-81)||(33388552-33388603)
chr6 (39-81)||(33399518-33399560)
[»] chr2 (1 HSPs)
chr2 (30-148)||(17440303-17440421)
[»] scaffold1408 (1 HSPs)
scaffold1408 (40-81)||(1145-1186)
[»] scaffold0428 (1 HSPs)
scaffold0428 (40-81)||(6891-6932)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31148762 - 31148982
Alignment:
Q  1 atattttttggtatgattattagttttttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatggacccatttgcaccagtttca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31148762 atattttttggtattattattagttttttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatggacccatttgcaccagtttca 31148861  T
Q  101 cacatccttcaaaacttacacgctcaagatttgggacctctccaaaatttggcatctttcttagactttttgagtggcttagatccaaagttctcaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31148862 cacatccttcaaaacttacacgctcaagatttgggacctctccaaaatttggcatctttcttagactttttgagtggcttagatccaaagttctcaaatt 31148961  T
Q  201 cggcaaatactgtcgcatacc 221  Q
    |||||||||||||||||||||    
T  31148962 cggcaaatactgtcgcatacc 31148982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 31157673 - 31157884
Alignment:
Q  10 ggtatgattattagttttttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatggacccatttgcaccagtttcacacatcctt 109  Q
    |||||| ||| ||| ||||||||||||||||| |||| | ||||||||||||||||||||||||| |||||| | || ||||| || || | ||| ||||    
T  31157673 ggtatgcttactagatttttgcaatctttcaatttcatgaaaacaagctttcttagaaccccaattgatggatcaatctgcacaagctttatacagcctt 31157772  T
Q  110 caaaacttacacgctcaagatttgggacctctccaaaatttggcatctttcttagactttttgagtggcttagatccaaagttctcaaattcggcaaata 209  Q
      | | |||     || |||||||| | ||||||||||| ||||| |||||||||| | ||||||||||||||||||||| || ||||||| ||||||||    
T  31157773 tgagatttagctcttctagatttggcatctctccaaaatctggcacctttcttagattctttgagtggcttagatccaaaattttcaaattgggcaaata 31157872  T
Q  210 ctgtcgcatacc 221  Q
    ||| | ||||||    
T  31157873 ctgccacatacc 31157884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 31503759 - 31503573
Alignment:
Q  27 tttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatggacccatttgcaccagtttcacacatccttcaaaacttacacgctca 126  Q
    |||||| |||||||| |||| ||||||||||||| ||||||  |||||||||||| | || ||||| ||||| | ||||||||| | |  ||  ||||||    
T  31503759 tttgcagtctttcaagttcaagtaaacaagctttgttagaagaccaatagatggatctatctgcacaagttttatacatccttccagatctagccgctca 31503660  T
Q  127 agatttgggacctctccaaaatttggcatctttcttagactttttgagtggcttagatccaaagttctcaaattcggcaaatactgt 213  Q
    || || |||| ||||||||||| |||||||||| ||| | |||| |||||||||||||||||| ||||||||||  ||| |||||||    
T  31503659 aggttcgggaactctccaaaatgtggcatctttattaaatttttggagtggcttagatccaaatttctcaaattgcgcagatactgt 31503573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 31028034 - 31028182
Alignment:
Q  10 ggtatgattattagttttttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatggacccatttgcaccagtttcacacatcctt 109  Q
    |||||| ||||||| |||||||||| |||||| |||| | | ||||||||||| ||||  |||||||||||| | |||||||| || || |||||||| |    
T  31028034 ggtatgcttattagatttttgcaatttttcaagttcaagaatacaagctttctcagaagaccaatagatggatctatttgcacaagatttacacatccgt 31028133  T
Q  110 caaaacttacacgctcaagatttgggacctctccaaaatttggcatctt 158  Q
    | | | | |  |||||||||||||| |||||||||||||||||||||||    
T  31028134 cgagattcagccgctcaagatttggaacctctccaaaatttggcatctt 31028182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 31526887 - 31527090
Alignment:
Q  10 ggtatgattattagttttttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatggacccatttgcaccagtttcacacatcctt 109  Q
    |||||| ||| ||| ||||||||||||| |||||||| ||||||||| ||||||||||| | |||||||||| | || ||| | ||||| ||||||||||    
T  31526887 ggtatggttactagatttttgcaatcttccaaattcaagtaaacaagttttcttagaacactaatagatggatctatctgctcaagttttacacatcctt 31526986  T
Q  110 caaaacttacacgctcaagatttgggacctctccaaaatttggcatctttcttagactttttgagtggcttagatccaaagttctcaaattcggcaaata 209  Q
      | | |||  ||||||||||| |||| |||||| |||| |||||  ||| |||||||||| ||||  || |  || | |||||||||||| ||||| ||    
T  31526987 tgagatttagccgctcaagattagggatctctccgaaatctggcacttttattagacttttggagttcctcaattcaagagttctcaaatttggcaagta 31527086  T
Q  210 ctgt 213  Q
    ||||    
T  31527087 ctgt 31527090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 31498645 - 31498460
Alignment:
Q  28 ttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatggacccatttgcaccagtttcacacatccttcaaaacttacacgctcaa 127  Q
    ||||||||||| ||||||| | |||||| |||||||||||  |||||||||||| |||   ||| ||  ||   ||||||||| | | |||   ||||||    
T  31498645 ttgcaatcttttaaattcaaggaaacaatctttcttagaagtccaatagatggatccaaccgcaacaaatttttacatccttccagatttaagtgctcaa 31498546  T
Q  128 gatttgggacctctccaaaatttggcatctttcttagactttttgagtggcttagatccaaagttctcaaattcggcaaatactgt 213  Q
    ||||||||| ||||||||||||||||| |||| |||||  |   |||| |||||||||||||||| |||||||||||| |||||||    
T  31498545 gatttgggaactctccaaaatttggcacctttattagatgtgaagagtagcttagatccaaagttatcaaattcggcagatactgt 31498460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 31472110 - 31471923
Alignment:
Q  26 ttttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatggacccatttgcaccagtttcacacatccttcaaaacttacacgctc 125  Q
    |||||||||| |||||||||| ||| ||||||||| | |||| || |||||| | | |||  ||||| ||||| | ||||||||| | |  ||  |||||    
T  31472110 ttttgcaatcattcaaattcaagtatacaagctttgtaagaagcctaatagacgaatccaactgcacaagttttatacatccttccagatctagccgctc 31472011  T
Q  126 aagatttgggacctctccaaaatttggcatctttcttagactttttgagtggcttagatccaaagttctcaaattcggcaaatactgt 213  Q
    ||||||||||| |||||||||||  ||||||||| | | | |||  |||| ||||||||||||| |||||||||| |||| |||||||    
T  31472010 aagatttgggaactctccaaaatgcggcatctttatgaaattttgggagtagcttagatccaaatttctcaaattgggcagatactgt 31471923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 31478606 - 31478436
Alignment:
Q  27 tttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatggacccatttgcaccagtttcacacatccttcaaaacttacacgctca 126  Q
    |||||||||||||||||||| ||||||||||||  ||| ||  | || ||||||| |||  ||||| ||||| | ||||||||| | |  ||  ||||||    
T  31478606 tttgcaatctttcaaattcaagtaaacaagcttcgttaaaagactaagagatggatccaactgcacaagttttatacatccttccagatctagccgctca 31478507  T
Q  127 agatttgggacctctccaaaatttggcatctttcttagactttttgagtggcttagatccaaagttctcaa 197  Q
    ||||| |||| ||||||||||| |||||||||| ||| | |||| |||||||||||||  ||| |||||||    
T  31478506 agattcgggaactctccaaaatgtggcatctttattaaatttttggagtggcttagatttaaatttctcaa 31478436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 31484423 - 31484249
Alignment:
Q  31 caatctttcaaattcaggtaaacaagctttcttagaaccccaatagatggacccatttgcaccagtttcacacatccttcaaaacttacacgctcaagat 130  Q
    |||| ||||||||||| | ||||||||||  || |||  | |||| || || |||| | ||| ||||| |||||||||||||   |||  ||||||||||    
T  31484423 caatttttcaaattcaagaaaacaagcttctttggaagacaaataaatagatccatctccacaagttttacacatccttcaaggtttaaccgctcaagat 31484324  T
Q  131 ttgggacctctccaaaatttggcatctttcttagactttttgagtggcttagatccaaagttctcaaattcggca 205  Q
    |||||||||||||||||| | |||||||  ||| | || | |||| ||||||||| | ||| |||||||| ||||    
T  31484323 ttgggacctctccaaaatctagcatcttgattaaatttgtagagtagcttagatcaagagtcctcaaattgggca 31484249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 213
Target Start/End: Complemental strand, 31491404 - 31491228
Alignment:
Q  37 ttcaaattcaggtaaacaagctttcttagaaccccaatagatggacccatttgcaccagtttcacacatccttcaaaacttacacgctcaagatttggga 136  Q
    |||||||||| | ||||||||| ||||||||  |||||||||| |   || ||||| ||  | ||||||||||||| | |||  |||| |||||||||||    
T  31491404 ttcaaattcaagaaaacaagctctcttagaaggccaatagatgaattaatctgcacaaggcttacacatccttcaagatttagccgcttaagatttggga 31491305  T
Q  137 cctctccaaaatttggcatctttcttagactttttgagtggcttagatccaaagttctcaaattcggcaaatactgt 213  Q
     |||| |||||| ||||||| |   |||| |||| |||  ||||||||||| | | |||||||| |||| |||||||    
T  31491304 actctgcaaaatgtggcatcgtggctagatttttagagcagcttagatccagattcctcaaattgggcagatactgt 31491228  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 33058041 - 33058228
Alignment:
Q  26 ttttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatggacccatttgcaccagtttcacacatccttcaaaacttacacgctc 125  Q
    ||||||||||||| |  |||| ||||||||||||||||||||  |||||||||||| |||  |  || || || | ||||||||| |||  || ||||||    
T  33058041 ttttgcaatcttttaggttcaagtaaacaagctttcttagaagtccaatagatggatccaactcaacaaggtttatacatccttccaaatctaaacgctc 33058140  T
Q  126 aagatttgggacctctccaaaatttggcatctttcttagactttttgagtggcttagatccaaagttctcaaattcggcaaatactgt 213  Q
    |||||| |||| ||||||||||| |   ||||||  |||| || | ||||| | ||||||||| ||||||||||| || | |||||||    
T  33058141 aagattcgggaactctccaaaatctattatcttttctagatttctggagtgacgtagatccaatgttctcaaattgggaagatactgt 33058228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 33272266 - 33272337
Alignment:
Q  10 ggtatgattattagttttttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatgga 81  Q
    |||||| ||| ||| |||||||||| ||| ||||||| ||||||||||||||||||||  ||||||||||||    
T  33272266 ggtatgcttactagatttttgcaattttttaaattcaagtaaacaagctttcttagaagtccaatagatgga 33272337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 33286023 - 33286079
Alignment:
Q  25 tttttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatgga 81  Q
    |||||||||||||| ||||||| ||||||||| ||||||||||  ||||||||||||    
T  33286023 tttttgcaatcttttaaattcaagtaaacaaggtttcttagaagtccaatagatgga 33286079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 9167256 - 9167335
Alignment:
Q  31 caatctttcaaattcaggtaaacaagctttcttagaaccccaatagatggacccatttgcaccagtttcacacatccttc 110  Q
    |||||||| | ||||| ||||||||||||||||||||  |||| ||||||| |||  | ||| ||||| |||||||||||    
T  9167256 caatcttttacattcaagtaaacaagctttcttagaagtccaagagatggatccaactccacaagttttacacatccttc 9167335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 33304946 - 33305017
Alignment:
Q  10 ggtatgattattagttttttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatgga 81  Q
    |||||| ||| ||| |||||||| || |  ||||||| ||||||||||||||||||||  ||||||||||||    
T  33304946 ggtatgcttactagatttttgcattcatataaattcaagtaaacaagctttcttagaagtccaatagatgga 33305017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 33359182 - 33359281
Alignment:
Q  10 ggtatgattattagttttttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatggacccatttgcaccagtttcacacatcctt 109  Q
    |||||| ||| ||| |||||| ||||||| || |||| ||||||||||||| ||||||  |||| ||||||| |||  | ||| ||||| ||||||||||    
T  33359182 ggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagcttttttagaagtccaagagatggatccaactccacaagttttacacatcctt 33359281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 33388552 - 33388603
Alignment:
Q  30 gcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatgga 81  Q
    |||| ||| |||||||| ||||||||||||||||||||  ||||||||||||    
T  33388552 gcaaccttccaaattcaagtaaacaagctttcttagaagtccaatagatgga 33388603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 33399518 - 33399560
Alignment:
Q  39 caaattcaggtaaacaagctttcttagaaccccaatagatgga 81  Q
    |||||||| ||||||||||||||||||||  ||||||||||||    
T  33399518 caaattcaagtaaacaagctttcttagaagtccaatagatgga 33399560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 148
Target Start/End: Complemental strand, 17440421 - 17440303
Alignment:
Q  30 gcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagatggacccatttgcaccagtttcacacatccttcaaaacttacacgctcaaga 129  Q
    ||||||||| || |||| ||||||||||||||||||||  ||||| |||||| ||| || ||| ||| |  |||||||||| ||| |||  | |||||||    
T  17440421 gcaatcttttaagttcaagtaaacaagctttcttagaagtccaattgatggatccaattccacaagtctttcacatccttccaaatttaaccactcaaga 17440322  T
Q  130 tttgggacctctccaaaat 148  Q
    ||||||| |||||||||||    
T  17440321 tttgggaactctccaaaat 17440303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 1145 - 1186
Alignment:
Q  40 aaattcaggtaaacaagctttcttagaaccccaatagatgga 81  Q
    ||||||| ||||||||||||||||||||  ||||||||||||    
T  1145 aaattcaagtaaacaagctttcttagaagtccaatagatgga 1186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 6891 - 6932
Alignment:
Q  40 aaattcaggtaaacaagctttcttagaaccccaatagatgga 81  Q
    ||||||| ||||||||||||||||||||  ||||||||||||    
T  6891 aaattcaagtaaacaagctttcttagaagtccaatagatgga 6932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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