View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8116_low_1 (Length: 295)
Name: NF8116_low_1
Description: NF8116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8116_low_1 |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 3 - 282
Target Start/End: Original strand, 17059692 - 17059965
Alignment:
| Q |
3 |
actagtcaggtatggttctctgttcacttctctgtaatgttgtaagtatttattataattttaaattttcagtctttgacaagcttttatatgattgctt |
102 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17059692 |
actagtcaggtatggttctctgt------ctctgtaatgttgtaagtattgattataattttaaattttcagtctttgacaagcttttatatgattgctt |
17059785 |
T |
|
| Q |
103 |
ctatttttggttgattaacttaatttaaatatggttatattatatgattgtttctatagaagatattttttagaaaatgaatttttatggatttagtact |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17059786 |
ctatttttggttgattaacttaatttaaatatggttatattatatgattgtttctatagaagatattttttagaaaatgaatttttatggatttagtact |
17059885 |
T |
|
| Q |
203 |
aattttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaatttctgagtttgtgatg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17059886 |
aattttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaatttctgagtttgtgatg |
17059965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 168 - 282
Target Start/End: Complemental strand, 43262334 - 43262222
Alignment:
| Q |
168 |
ttttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaatt |
267 |
Q |
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||||| |||||||||||||| |||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| | || ||||||||| || |
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| T |
43262334 |
tttttgagaaaatgaattttcatggatttagcactaattttggaatctacttctcatgtggagaatggatatgaaaatgatgcacaagacttgtttagtt |
43262235 |
T |
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| Q |
268 |
tctgagtttgtgatg |
282 |
Q |
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||||||||||||| |
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| T |
43262234 |
--tgagtttgtgatg |
43262222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 36229097 - 36229182
Alignment:
| Q |
189 |
atggatttagtactaattttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaatttctgagt |
274 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| | || ||||||||||||| ||||| |
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| T |
36229097 |
atggatttagtactaattttggaatctacttctcacgtggagaatgaatatgaaaataatgcacaagacttgtttaatttttgagt |
36229182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 18202163 - 18202127
Alignment:
| Q |
10 |
aggtatggttctctgttcacttctctgtaatgttgta |
46 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
18202163 |
aggtatggttctctcttcacttctctgtaatgttgta |
18202127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 3 - 282
Target Start/End: Original strand, 1607 - 1886
Alignment:
| Q |
3 |
actagtcaggtatggttctctgttcacttctctgtaatgttgtaagtatttattataattttaaattttcagtctttgacaagcttttatatgattgctt |
102 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1607 |
actagtcaggtatggttctctattcacttctctgtaatgttgtaagtgttgattataattttaaattttcagtctttgacaagcttttgtatgattgctt |
1706 |
T |
|
| Q |
103 |
ctatttttggttgattaacttaatttaaatatggttatattatatgattgtttctatagaagatattttttagaaaatgaatttttatggatttagtact |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
1707 |
ctatttttggttgattaacttaatttaaatatggttatattatatgattgtttctatagaagttattttttagaaaatgaattttcatggatttagtact |
1806 |
T |
|
| Q |
203 |
aattttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaatttctgagtttgtgatg |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1807 |
aattttggaatctacttgtcatttggagaatgaatatgaaaataatgtataaaacttgtttaatttctgagtttgtgatg |
1886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 3 - 282
Target Start/End: Original strand, 8209 - 8488
Alignment:
| Q |
3 |
actagtcaggtatggttctctgttcacttctctgtaatgttgtaagtatttattataattttaaattttcagtctttgacaagcttttatatgattgctt |
102 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8209 |
actagtcaggtatggttctctattcacttctctgtaatgttgtaagtgttgattataattttaaattttcagtctttgacaagcttttgtatgattgctt |
8308 |
T |
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| Q |
103 |
ctatttttggttgattaacttaatttaaatatggttatattatatgattgtttctatagaagatattttttagaaaatgaatttttatggatttagtact |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
8309 |
ctatttttggttgattaacttaatttaaatatggttatattatatgattgtttctatagaagttattttttagaaaatgaattttcatggatttagtact |
8408 |
T |
|
| Q |
203 |
aattttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaatttctgagtttgtgatg |
282 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8409 |
aattttggaatctacttgtcatttggagaatgaatatgaaaataatgtataaaacttgtttaatttctgagtttgtgatg |
8488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 67 - 279
Target Start/End: Original strand, 48223016 - 48223226
Alignment:
| Q |
67 |
attttcagtctttgacaagcttttatatgattgcttctatttttggttgattaacttaatttaaatatggttatattatatgattgtttctatagaagat |
166 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | |
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| T |
48223016 |
attttcagtctttgacaagcttttatatgattgcttctatttttggttgattaacttaatttaaatcaggttatat---atgattgtttctatagaagtt |
48223112 |
T |
|
| Q |
167 |
atttt-ttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaa |
265 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48223113 |
atttttttagaaaatgaattttcatggatttagtactaattttggaatctacttgtcatctggagaatgaatatgaaaatgatgtataaaacttgtttaa |
48223212 |
T |
|
| Q |
266 |
tttctgagtttgtg |
279 |
Q |
| |
|
|||||||||||||| |
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| T |
48223213 |
tttctgagtttgtg |
48223226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 267
Target Start/End: Original strand, 48223411 - 48223510
Alignment:
| Q |
168 |
ttttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaatt |
267 |
Q |
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||||| |||||||||||||| || |||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||||| || | |||||||||| |
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| T |
48223411 |
tttttgagaaaatgaattttcatagatttagtactaattttgtaatctactcctcatgtggagaatgtatatgaaaatgatgtagaagatttgtttaatt |
48223510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 5523894 - 5523935
Alignment:
| Q |
2 |
cactagtcaggtatggttctctgttcacttctctgtaatgtt |
43 |
Q |
| |
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||||| ||||||||||| |||| ||||||||||||||||||| |
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| T |
5523894 |
cactactcaggtatggtgctctattcacttctctgtaatgtt |
5523935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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