View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8116_low_2 (Length: 258)
Name: NF8116_low_2
Description: NF8116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8116_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 55059494 - 55059319
Alignment:
| Q |
9 |
tgagatgaataaatatagacctttggattaaaatgaaaggtgtagattaaaaggtccacttgctactctttttatttgaatgcgcctcctactcttcttc |
108 |
Q |
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| T |
55059494 |
tgagaggaataaatatagacctttggattaaaatgaaaggtgtagattaaaaggtccacgtgctactctttttatttgaatgcgcctcctactcttcttc |
55059395 |
T |
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| Q |
109 |
ttcctttgttctttgcttctct----ctctgacgcaaacctgatctaattttgcctgctccctaattcatttgttt |
180 |
Q |
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| T |
55059394 |
ttcctttgttctttgcttctctctctctctgacgcaaacctgatctaattttgcctgctccctaattcatttgttt |
55059319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 4775368 - 4775422
Alignment:
| Q |
8 |
gtgagatgaataaatatagacctttggattaaaatgaaaggtgtagattaaaagg |
62 |
Q |
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| T |
4775368 |
gtgagaggaataaatatggaccattggattaaaatggaaggtgaagattaaaagg |
4775422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 180
Target Start/End: Original strand, 43447576 - 43447761
Alignment:
| Q |
9 |
tgagatgaataaatatagacctttggattaaaatgaaaggtg-tagattaaaaggtccacttg------------ctactctttttatttgaatgcgcct |
95 |
Q |
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| T |
43447576 |
tgagaggaataaatatagacctttggattaaaatgaaagggggtagattaaaaggtccacgtgaagattcacgtgctagtctttttatttcaacgcgcct |
43447675 |
T |
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| Q |
96 |
cctactcttcttcttcctttgttctttgcttctctctc--tgacgcaaacctgatctaattttgcctgctccctaattcatttgttt |
180 |
Q |
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| T |
43447676 |
cctaatcttcttcttc-tttgttctctgcttctgtctcactgatgcaaacctgatctgattttgcctgctccctaattcatttgttt |
43447761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 1896151 - 1896100
Alignment:
| Q |
18 |
taaatatagacctttggattaaaatgaaaggtgtagattaaaaggtccactt |
69 |
Q |
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| T |
1896151 |
taaatatagacctttagatctaaatgaatggtgtagattaaaagatccactt |
1896100 |
T |
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