View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8117_high_1 (Length: 431)
Name: NF8117_high_1
Description: NF8117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8117_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Original strand, 38953078 - 38953484
Alignment:
| Q |
8 |
tcctttttctgaagacatgttgccatatatttcgcaactctttcatccttataggcttaaggagataatcacatgcaccgtgttggacgcctttcatcac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38953078 |
tcctttttctgaagacatgttgccatatatttcgcaactctttcatccttatgggcttaaggagataatcacatgcaccgtgttggacgcctttcatcac |
38953177 |
T |
|
| Q |
108 |
cctgcttgtttctccatccacggacatcactgaatagcattgcaaagtgtgatttgtcagaggggcggcttttaatcaaattgatcaaaggattataatg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38953178 |
cctgcttgtttctccatccacggacatcactgaatagcattgcaaagtgtgatttgtcagaggggcggcttttaatcaaattgatcaaaggattataatg |
38953277 |
T |
|
| Q |
208 |
ttatcattgaacaaaaaatgtgaatatattattgatagagaactgactaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccg |
307 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38953278 |
ttatcattgaacaaaatatgtgaatatattattgatagagaactgactaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccg |
38953377 |
T |
|
| Q |
308 |
tccatgtcaggcatgttaacatcgctgatcactatatcgtatccgtctttcctttcacggagcaagcttagagcatgtcttgctaagcaacatgtggtca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38953378 |
tccatgtcaggcatgttaacatcgctgatcactatatcgtatccatctttcctttcacggagcaagcttagagcatgtcttgctaagcaacatgtggtca |
38953477 |
T |
|
| Q |
408 |
ctgaaac |
414 |
Q |
| |
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||||||| |
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| T |
38953478 |
ctgaaac |
38953484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 253 - 411
Target Start/End: Complemental strand, 34316117 - 34315959
Alignment:
| Q |
253 |
actaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatcgctgatcactatatcgtatccg |
352 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||| |
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| T |
34316117 |
actaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgtttacatcgctgatcactatgtcatatgta |
34316018 |
T |
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| Q |
353 |
tctttcctttcacggagcaagcttagagcatgtcttgctaagcaacatgtggtcactga |
411 |
Q |
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|||| ||||| |||||| | ||||| | | ||||||||||||||||||||||||| |
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| T |
34316017 |
cctttactttcgcggagcttcttaagagcctctattgctaagcaacatgtggtcactga |
34315959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 34316455 - 34316327
Alignment:
| Q |
10 |
ctttttctgaagacatgttgccatatatttcgcaactctttcatccttataggcttaaggagataatcacatgcaccgtgttggacgcctttcatcaccc |
109 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| | |||||||||||| || ||||| || ||||||||||||| |
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| T |
34316455 |
ctttttcttaagacatgttgccatatgtttcgcacttctttcatccttataggcttaagcaaataatcacatgctccatgttgaacacctttcatcaccc |
34316356 |
T |
|
| Q |
110 |
tgcttgtttctccatccacggacatcact |
138 |
Q |
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|||||||||||||||| || ||||||||| |
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| T |
34316355 |
tgcttgtttctccatcaacagacatcact |
34316327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 2893228 - 2893135
Alignment:
| Q |
248 |
aactgactaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatcgctgatcacta |
341 |
Q |
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|||| ||| |||||||| || |||||||||||||||||| |||||||||| || || ||||||||||| ||||| | ||||| |||||| |||| |
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| T |
2893228 |
aacttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccgtccatgtctggcatatgaacattgctgattacta |
2893135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 2888633 - 2888540
Alignment:
| Q |
248 |
aactgactaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatcgctgatcacta |
341 |
Q |
| |
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|||| ||| |||||||| | ||||||||||||||||||| |||||||||| || || || |||||||| ||||| | ||||| |||||| |||| |
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| T |
2888633 |
aacttacttatgacaggtaaatccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattacta |
2888540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 2904736 - 2904643
Alignment:
| Q |
248 |
aactgactaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatcgctgatcacta |
341 |
Q |
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| T |
2904736 |
aacttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattacta |
2904643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 54895038 - 54895115
Alignment:
| Q |
253 |
actaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatc |
330 |
Q |
| |
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|||||||| ||| || ||||||||||||||||| |||||||| || |||||||| ||||| || |||||||| ||||| |
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| T |
54895038 |
actaatgaaaggcaggtccatctcaagtccaacttgctcaaggagcttgaaaccatccatttctggcatgtttacatc |
54895115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 54905479 - 54905541
Alignment:
| Q |
268 |
atccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatc |
330 |
Q |
| |
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|||||| ||||||||||| |||||||| || ||||| || |||||||| |||||| ||||||| |
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| T |
54905479 |
atccatttcaagtccaacttgctcaaggagcttgaagccatccatgtctggcatgctaacatc |
54905541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 48870455 - 48870519
Alignment:
| Q |
257 |
atgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcat |
321 |
Q |
| |
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|||||||| || |||||||||||||||||| |||||||||| || || || |||||||| ||||| |
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|
| T |
48870455 |
atgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcat |
48870519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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