View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8117_high_11 (Length: 287)
Name: NF8117_high_11
Description: NF8117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8117_high_11 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 30750732 - 30750477
Alignment:
| Q |
15 |
aagaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgcaccaattccttgcttcttgctcacc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
30750732 |
aagaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttgaatccttgcaccaattccttgcttcttcctcacc |
30750633 |
T |
|
| Q |
115 |
cattaacatttaaatcttctttaggtcgagtgagaggataagaaatatggataggagtgtttataattctggtttttaattacaaatttgaggcacaaac |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30750632 |
cattaacatttaaatcttctttaggtcgagtgagacggtaagaaatatggataggagtgtttataattctggtttttaattacaaatttgaggcacaaac |
30750533 |
T |
|
| Q |
215 |
aatctaaaacacatgcatccaatcttcttagtgggaggtgaagattagatggttct |
270 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30750532 |
aatctaaaacacatgcatccaactttcttagtgggaggtgaagattagatggttct |
30750477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 30760625 - 30760552
Alignment:
| Q |
16 |
agaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgc |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30760625 |
agaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgc |
30760552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 241546 - 241500
Alignment:
| Q |
82 |
atccttgcaccaattccttgcttcttgctcacccattaacatttaaa |
128 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
241546 |
atccttgcacaaattccttgcttcttcctcacccatcaacatttaaa |
241500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 14575829 - 14575875
Alignment:
| Q |
82 |
atccttgcaccaattccttgcttcttgctcacccattaacatttaaa |
128 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
14575829 |
atccttgcacaaattccttgcttcttcctcacccatcaacatttaaa |
14575875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University