View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8117_high_8 (Length: 308)
Name: NF8117_high_8
Description: NF8117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8117_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 43843446 - 43843154
Alignment:
| Q |
1 |
cctctgttttcatcctgagtttttgtatatttttcccatagctttgccagttgccatatacaacatcaatgatttttggttcttgtgaatagattaatgc |
100 |
Q |
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| T |
43843446 |
cctctgttttcatcctgagtttttgtatatttttcccatagctttgccagttgccatatacaacatcaatgatttttggttcttgtgaatagattaatgc |
43843347 |
T |
|
| Q |
101 |
aggtgctgtaatgctgacagattgtgcattttggttcataattgttccttttctaaccatcaaagattacaacataaatttagtaagtactactatcatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43843346 |
aggtgctgtaatgctgacagattgtgcattttggttcataattgttccttttctaaccatcaaagattacaacataaatttagtaagtactgctatcatt |
43843247 |
T |
|
| Q |
201 |
tacttattgtctaatggatattttatgtctttttcttaataactttgacttagataagttatattctatgcttgttttaataatcagtattat |
293 |
Q |
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| T |
43843246 |
tacttattgtctcatggatattttatgtctttttcttaataactttgacttagataagttatattctatgcttgttttaataatcagtgttat |
43843154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 34893355 - 34893248
Alignment:
| Q |
82 |
cttgtgaatagattaatgcaggtgctgtaatgctgacagattgtgcattttggttcataattgttccttttctaaccatcaaagattacaacataaattt |
181 |
Q |
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||||||||||||| ||||||||||||| | |||| || ||||||| ||||||||| || ||||||| ||||||||||||||||||||||| |||| || |
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| T |
34893355 |
cttgtgaatagataaatgcaggtgctgcattgctcactgattgtgtattttggtttgtatttgttccatttctaaccatcaaagattacaatctaaactt |
34893256 |
T |
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| Q |
182 |
agtaagta |
189 |
Q |
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||||||| |
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| T |
34893255 |
tgtaagta |
34893248 |
T |
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