View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8117_high_9 (Length: 303)
Name: NF8117_high_9
Description: NF8117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8117_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 3804662 - 3804396
Alignment:
| Q |
20 |
actctaggttgcagatattcactcaggtttttctctcgtattgcgtttctggtcggtgttgttcttctttttctccccactcgttcttcatgttaggcat |
119 |
Q |
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| T |
3804662 |
actctaggttgccgatattcactcaggtttttctctcgtattgcgtttctggttggtgttgttcttctttttctccccactcgttcttcatgttaggcat |
3804563 |
T |
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| Q |
120 |
gctgttgaatctgagtttgtatttgtttcattttcaggttattcactgttacacgcacattgttcttcgcttttttcaaggtatgaaatttgttcctttc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3804562 |
gctgttgaatctgagtttgtatttgtttcattttcaggttattcactgttacacgcacattgttcttcgctttgttcaaggtatgaaatttgttcctttc |
3804463 |
T |
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| Q |
220 |
tcaattgtagttgtgatagtttaatttgttctgaaatttttgggattagggtttaaaacctttgatt |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3804462 |
tcaattgtagttgtgatagtttaatttgttctgaaatttttgggattagggtttaaaacctttgatt |
3804396 |
T |
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