View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8117_low_1 (Length: 689)
Name: NF8117_low_1
Description: NF8117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8117_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 18 - 671
Target Start/End: Original strand, 4512890 - 4513544
Alignment:
| Q |
18 |
acatcagggcaagggagaacttttactcaggatgttgttgaagcgatggcctctttaaataaggtactttgtcaacctattcatcatcccaatatgcaat |
117 |
Q |
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| T |
4512890 |
acatcagggcaagggagaacttttactcaggatgttgttgaagcgatggcctctttaaataaggtactttgtcaacctattcatcatcccaatatgcaat |
4512989 |
T |
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| Q |
118 |
ttgatgcttatgttatctgaatccatgcgccatatggtaatgctcgcagaaacctattattcttgctctttccaacccaacatctcagtcagaatgtact |
217 |
Q |
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| T |
4512990 |
ttgatgcttatgttatctgaatccatgtgccatatggtaatgctcgcagaaacctattattcttgctctttccaacccaacatctcagtcagaatgtact |
4513089 |
T |
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| Q |
218 |
gcagaagaagcttatacgtggactcaggtaatgtgaaaacacggctagtagctttatgttgaaaatttcggcttccttatcacttcatatggatgataac |
317 |
Q |
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| T |
4513090 |
gcagaagaagcttatacgtggactcaggtaatgtgaaaacacggctagtagctttatgttgaaaatttcggcttccttatcacttcatatggatgataac |
4513189 |
T |
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| Q |
318 |
gaagaatgactcttctcattcgttttttattcattgtccgtttgtgtttctgtcagggacatgccatttttgctagcggtagtccattttccccagttga |
417 |
Q |
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| T |
4513190 |
gaagaatgactcttctcattcgttttttattcattgtccgtttgtgtttctgtcagggacatgccatttttgctagcggtagtccattttccccagttga |
4513289 |
T |
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| Q |
418 |
atatgaaggaaaagtgtttgtacctggccaggtctgaactcaatggaaagtttataaatgtcagaagnnnnnnnntccgtatcaaatgaattctaattta |
517 |
Q |
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| T |
4513290 |
atatgaaggaaaagtgtttgtacctggccaggtctgaactcaatggaaagtttataaatgtcagaagaaaaaaaatccgtatcaaatgaattctaattta |
4513389 |
T |
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| Q |
518 |
a-nnnnnnngttaatcaggccaataacgcatacatttttcctggatttggtctcggtttaataatgtctggtacaatccgaatgcacgatggcttgcttc |
616 |
Q |
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| T |
4513390 |
attttttttgttaatcaggccaataacgcatacatttttcctggatttggtctcggtttaataatgtctggtacaatccgaatgcacgatggcttgcttc |
4513489 |
T |
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| Q |
617 |
tggcagcttgtaagtgcttcagagattcaaacattcacttcaataatgatgcttg |
671 |
Q |
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| T |
4513490 |
tggcagcttgtaagtgcttcagagattcaaacattcacttcaataatgatgcttg |
4513544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 43432373 - 43432279
Alignment:
| Q |
155 |
taatgctcgcagaaacctattattcttgctctttccaacccaacatctcagtcagaatgtactgcagaagaagcttatacgtggactcaggtaat |
249 |
Q |
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| T |
43432373 |
taatgcttgtagaaacctattattctttctctttccaacccaacgtcacagtccgaatgtactgctgaagaagcttatacgtggacacaggtaat |
43432279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 452
Target Start/End: Complemental strand, 43432203 - 43432121
Alignment:
| Q |
370 |
tcagggacatgccatttttgctagcggtagtccattttccccagttgaatatgaaggaaaagtgtttgtacctggccaggtct |
452 |
Q |
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| T |
43432203 |
tcagggacgtgcgatctttgcaagtgggagcccattttcgccggttgaatataaggggaaagtgtttgtgcctggccaggtct |
43432121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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