View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8117_low_10 (Length: 332)
Name: NF8117_low_10
Description: NF8117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8117_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 28 - 332
Target Start/End: Original strand, 43842878 - 43843182
Alignment:
| Q |
28 |
gagttattaatatcattaccagattttaaccatagcatgaacaatccattggaaaatgacatatgtaactgtccacaggcaaaagtatcctattcgaaac |
127 |
Q |
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| T |
43842878 |
gagttattaatatcattaccagattttaaccatagcatgaacaatccattggaaaatgacatatgtaactgtccacaggcaaaagtatcctattcgaaac |
43842977 |
T |
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| Q |
128 |
caagggaacctctaaagaggnnnnnnnntaaacaagggtaagaattcacatatgcatggaagtatacaattcaatgtaataataatcacatatataaact |
227 |
Q |
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| T |
43842978 |
caagggaacctctaaagaggaaaaaaaataaacaagggtaagaattcacatatgcatggaagtatacaattcaatgtaataataatcacatatataaact |
43843077 |
T |
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| Q |
228 |
caccaggcaatttaaagctgtatctcctagcaggaaaacagcattgattgtatgcatacttatggtcagctgccacataacactgattattaaaacaagc |
327 |
Q |
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| T |
43843078 |
caccaggcaatttaaagctgtatctcctagcaggaaaacagcattgattgtatgcatacttatggtcagctgccacataacactgattattaaaacaagc |
43843177 |
T |
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| Q |
328 |
ataga |
332 |
Q |
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| T |
43843178 |
ataga |
43843182 |
T |
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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 34892904 - 34892978
Alignment:
| Q |
61 |
agcatgaacaatccattggaaaatgacatatgtaactgtccacaggcaaaagtatcctattcgaaaccaagggaa |
135 |
Q |
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| T |
34892904 |
agcatgaacaatccattggaaaatcacatatgcgactgtccataagcaaaagtatcccattcgaaaccaagggaa |
34892978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 34893066 - 34893119
Alignment:
| Q |
224 |
aactcaccaggcaatttaaagctgtatctcctagcaggaaaacagcattgattg |
277 |
Q |
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| T |
34893066 |
aactcaccaggcaatttaaagctgtatcacctatgaggaaaatagcattgattg |
34893119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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