View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8117_low_12 (Length: 314)

Name: NF8117_low_12
Description: NF8117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8117_low_12
NF8117_low_12
[»] chr4 (4 HSPs)
chr4 (91-314)||(32698832-32699055)
chr4 (91-203)||(45619355-45619468)
chr4 (91-135)||(20003585-20003629)
chr4 (91-125)||(40198884-40198918)
[»] chr7 (2 HSPs)
chr7 (91-314)||(5611008-5611230)
chr7 (95-157)||(30512955-30513017)
[»] chr5 (1 HSPs)
chr5 (91-203)||(3937685-3937798)
[»] chr8 (1 HSPs)
chr8 (91-149)||(36589072-36589130)
[»] chr3 (1 HSPs)
chr3 (91-153)||(22509054-22509116)
[»] chr6 (3 HSPs)
chr6 (199-264)||(1171120-1171185)
chr6 (125-180)||(1171335-1171391)
chr6 (201-269)||(20391897-20391965)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 91 - 314
Target Start/End: Complemental strand, 32699055 - 32698832
Alignment:
Q  91 caaacaacattcatcttcatcaacaaattaattcatgttcatccccaaattttaattcataaatctggatctacatttctaacacacacatccatcttcc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32699055 caaacaacattcatcttcatcaacaaattaattcatgttcatccctaaattttaattcataaatctggatctacatttctaacacacacatccatcttcc 32698956  T
Q  191 tcaaaactacaccaatccaagcttcaacctttcttcttcaagctaaactcaatttaacacagcaaattcatcccaaacctacatgtttgttgttcctcct 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32698955 tcaaaactacaccaatccaagcttcaacctttcttcttcaagctaaactcaatttaacacagcaaattcatcccaaacctacatgtttgttgttcctcct 32698856  T
Q  291 ccttcttattcttctcttcgcata 314  Q
    ||||||||||||||||||||||||    
T  32698855 ccttcttattcttctcttcgcata 32698832  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 45619468 - 45619355
Alignment:
Q  91 caaacaacattcatcttcatcaacaaattaattcatgttcatccccaaattttaattcataaatctggatctac-atttctaacacacacatccatcttc 189  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||| || || ||||||||  | |||||||    
T  45619468 caaacaacattcatctttatcaacaaattcattcatgttcatccccaaattttaattcaaagatctgaatctacaatctcaaacacacaggttcatcttc 45619369  T
Q  190 ctcaaaactacacc 203  Q
    |||||||| |||||    
T  45619368 ctcaaaaccacacc 45619355  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 20003585 - 20003629
Alignment:
Q  91 caaacaacattcatcttcatcaacaaattaattcatgttcatccc 135  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||    
T  20003585 caaacaacattcatcttcatcgacaaattcattcatgttcatccc 20003629  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 40198884 - 40198918
Alignment:
Q  91 caaacaacattcatcttcatcaacaaattaattca 125  Q
    |||||||||||||||||||||||||||||||||||    
T  40198884 caaacaacattcatcttcatcaacaaattaattca 40198918  T

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Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 91 - 314
Target Start/End: Complemental strand, 5611230 - 5611008
Alignment:
Q  91 caaacaacattcatcttcatcaacaaattaattcatgttcatccccaaattttaattcataaatctggatctacatttctaacacacacatccatcttcc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  5611230 caaacaacattcatcttcatcaacaaattaattcatgttcatccccaaattttaattcacaaatttggatctacatttctaacacacacatc-atcttcc 5611132  T
Q  191 tcaaaactacaccaatccaagcttcaacctttcttcttcaagctaaactcaatttaacacagcaaattcatcccaaacctacatgtttgttgttcctcct 290  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5611131 tcaaaaccacaccaatctaagcttcaacctttcttcttcaagctaaactcaatttaacacagcaaattcatcccaaaccttcatgtttgttgttcctcct 5611032  T
Q  291 ccttcttattcttctcttcgcata 314  Q
    ||||||||||||||||||||||||    
T  5611031 ccttcttattcttctcttcgcata 5611008  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 30513017 - 30512955
Alignment:
Q  95 caacattcatcttcatcaacaaattaattcatgttcatccccaaattttaattcataaatctg 157  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  30513017 caacattcatcttcatcaacaaattaattcatgttcatccctaaattttaattgataaatctg 30512955  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 3937798 - 3937685
Alignment:
Q  91 caaacaacattcatcttcatcaacaaattaattcatgttcatccccaaattttaattcataaatctggatctac-atttctaacacacacatccatcttc 189  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||| ||| || || || ||||||||  | |||||||    
T  3937798 caaacaacattcatctttatcaacaaattcattcatgttcatccccaaattttaattcaaagatctgaatccacaatctcaaacacacaagttcatcttc 3937699  T
Q  190 ctcaaaactacacc 203  Q
    |||||||| |||||    
T  3937698 ctcaaaaccacacc 3937685  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 36589130 - 36589072
Alignment:
Q  91 caaacaacattcatcttcatcaacaaattaattcatgttcatccccaaattttaattca 149  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  36589130 caaacaacattcatctttatcaacaaattcattcatgttcatccccaaattttaattca 36589072  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 22509054 - 22509116
Alignment:
Q  91 caaacaacattcatcttcatcaacaaattaattcatgttcatccccaaattttaattcataaa 153  Q
    |||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22509054 caaataacactcatcttcatcaacaaattaattcatgttcatcccctaattttaattcataaa 22509116  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 1171185 - 1171120
Alignment:
Q  199 acaccaatccaagcttcaacctttcttcttcaagctaaactcaatttaacacagcaaattcatccc 264  Q
    |||||||||||| |||| |||||||||||||||||||||||||| | |||||| ||||||||||||    
T  1171185 acaccaatccaaccttctacctttcttcttcaagctaaactcaaatcaacacaacaaattcatccc 1171120  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 1171391 - 1171335
Alignment:
Q  125 atgttcatccccaaattttaattcataaatctggatctaca-tttctaacacacaca 180  Q
    |||||||||||||||||||||||||||||| |||||||||| | |||||||||||||    
T  1171391 atgttcatccccaaattttaattcataaatttggatctacagtctctaacacacaca 1171335  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 20391965 - 20391897
Alignment:
Q  201 accaatccaagcttcaacctttcttcttcaagctaaactcaatttaacacagcaaattcatcccaaacc 269  Q
    |||||||||| ||||| ||||||||| |||| |||||||||| | |||||| |||||||||||||||||    
T  20391965 accaatccaaccttcagcctttcttcatcaacctaaactcaaatcaacacaacaaattcatcccaaacc 20391897  T

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