View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8117_low_15 (Length: 293)
Name: NF8117_low_15
Description: NF8117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8117_low_15 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 4512629 - 4512913
Alignment:
| Q |
9 |
ctagattattcttataattcttctatctctgcagggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacac |
108 |
Q |
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| T |
4512629 |
ctagattactcttataattcttctatctctgcagggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacac |
4512728 |
T |
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| Q |
109 |
gaacctgttgagaaacttgtagatgctgttaaagtacaatctctgtctcctattcgtccactnnnnnnnnnnnnnnnnnnntcggagagaaaagaagttt |
208 |
Q |
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| T |
4512729 |
gaacctgttgagaaacttgtagatgctgttaaagtacaatctctgtctcctattcgtccactcacacacaagcacacacactcggagagaaaagaagttt |
4512828 |
T |
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| Q |
209 |
caaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagggcaagggagaactttt |
293 |
Q |
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| T |
4512829 |
caaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagggcaagggagaactttt |
4512913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 43206699 - 43206652
Alignment:
| Q |
70 |
tcacttcaacatttcaagaagccatgggctcatgaacacgaacctgtt |
117 |
Q |
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| T |
43206699 |
tcacttcaacacttcaagaagccttgggctcatgaacacgagcctgtt |
43206652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 43432742 - 43432638
Alignment:
| Q |
41 |
agggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacacgaacctgttgagaaacttgtagatgctgttaa |
140 |
Q |
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| T |
43432742 |
agggattgattgtcagttcccgtaaagaatcactccaacatttcaagaagccgtgggctcatgaacacgaacctgttaaaaaccttcttgatgctgttaa |
43432643 |
T |
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| Q |
141 |
agtac |
145 |
Q |
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|||| |
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| T |
43432642 |
tgtac |
43432638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 3533801 - 3533733
Alignment:
| Q |
208 |
tcaaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagg |
277 |
Q |
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| T |
3533801 |
tcaaatttctcatatttgaatgttttctttt-cggcaaattaagccaacagtgttgattggaatatcagg |
3533733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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