View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8117_low_17 (Length: 271)
Name: NF8117_low_17
Description: NF8117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8117_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 255
Target Start/End: Original strand, 27597581 - 27597833
Alignment:
| Q |
4 |
ggagtaacatagtcaacaattataagctttagagaattaaaaaattatacccatacacatgaagcaaatggaacaagtatgaaattaactnnnnnnn-ca |
102 |
Q |
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| T |
27597581 |
ggagtaacatagtcaacaattataagctttagagaataacaaaattatacccatacacatgaagcaaatggaacaagtatgaaattaactaaaaaaaaca |
27597680 |
T |
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| Q |
103 |
caaataaattaagagttcaatcctttaacaaatgtcatgtcctttaactcgtatactgaactctacttcgttgccataaaattgagnnnnnnncgagaga |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27597681 |
caaataaattaagagttcaatcctttaacaaatgtcatgtcctttaactcgtatactgaactctacttcgttgccataaaattgagaaaaaaacgagaga |
27597780 |
T |
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| Q |
203 |
gataattagttggttaatcaaatgcaactctagattaaacatgaagttgcata |
255 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27597781 |
gatgattagttggttactcaaatgcaactctagattaaacatgaagttgcata |
27597833 |
T |
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