View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8117_low_3 (Length: 413)

Name: NF8117_low_3
Description: NF8117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8117_low_3
NF8117_low_3
[»] chr4 (3 HSPs)
chr4 (1-171)||(9498972-9499142)
chr4 (325-395)||(9499308-9499378)
chr4 (31-78)||(56201173-56201220)
[»] chr7 (5 HSPs)
chr7 (5-165)||(18846129-18846284)
chr7 (5-104)||(15660321-15660420)
chr7 (10-72)||(47790300-47790362)
chr7 (27-107)||(36692251-36692331)
chr7 (107-168)||(47790230-47790291)
[»] chr8 (4 HSPs)
chr8 (5-165)||(20293145-20293300)
chr8 (5-165)||(21079776-21079931)
chr8 (21-104)||(13955753-13955836)
chr8 (11-94)||(2108287-2108371)
[»] chr6 (4 HSPs)
chr6 (7-168)||(19058791-19058944)
chr6 (12-93)||(29355339-29355420)
chr6 (43-108)||(7492158-7492223)
chr6 (64-98)||(29355313-29355347)
[»] chr2 (2 HSPs)
chr2 (5-103)||(23218993-23219091)
chr2 (44-107)||(44672756-44672821)
[»] chr1 (4 HSPs)
chr1 (5-114)||(29403621-29403731)
chr1 (21-103)||(20039559-20039641)
chr1 (5-103)||(34624211-34624308)
chr1 (70-146)||(11375416-11375487)
[»] scaffold0692 (1 HSPs)
scaffold0692 (31-78)||(5006-5053)
[»] chr5 (1 HSPs)
chr5 (70-98)||(43575459-43575487)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 9498972 - 9499142
Alignment:
Q  1 gagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcct 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9498972 gagacattaagaaagtttgttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcct 9499071  T
Q  101 ttcatttcagttttctgttgttatcattgtaagagctttcagctcaccgttttccagttacataatacctt 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9499072 ttcatttcagttttctgttgttatcattgtaagagctttcagctcaccgttttccagttacataatacctt 9499142  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 9499308 - 9499378
Alignment:
Q  325 attatggaaagaattactacacaaaatagcccaatgctatatttatacattgcatgattttaagttggatg 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9499308 attatggaaagaattactacacaaaatagcccaatgctatatttatacattgcatgattttaagttggatg 9499378  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 56201173 - 56201220
Alignment:
Q  31 ttaggagagaagttctctctggtctaggagcttagctctggtaggagt 78  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  56201173 ttaggagagatgttctctctggtctaggagcctagctctggtaggagt 56201220  T

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Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 18846284 - 18846129
Alignment:
Q  5 cattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttca 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     ||     
T  18846284 cattcagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctcagaactctggttta-----tct 18846190  T
Q  105 tttcagttttctgttgttatcattgtaagagctttcagctcaccgttttccagttacataa 165  Q
    |||||  |||||||| | ||| ||||||||||||| |||||| |  |||||||||| ||||    
T  18846189 tttcaactttctgttttcatctttgtaagagctttgagctcatcactttccagttaaataa 18846129  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 15660321 - 15660420
Alignment:
Q  5 cattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttca 104  Q
    |||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15660321 cattcagaaagtttgttaagagttgtttaggagagaagttctttctggtctaggagcttagctctggtaggagttctctgaactctggtttatcttttca 15660420  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 47790362 - 47790300
Alignment:
Q  10 agaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggt 72  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47790362 agaaagtttcttaagagttgtttaggagagaagttctctctggtctaggagcttaactctggt 47790300  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 36692251 - 36692331
Alignment:
Q  27 ttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcattt 107  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||   ||||||||||    
T  36692251 ttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggttacccctttcattt 36692331  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 47790291 - 47790230
Alignment:
Q  107 tcagttttctgttgttatcattgtaagagctttcagctcaccgttttccagttacataatac 168  Q
    ||||||||||||| | ||| ||||||||||||| |||||| | ||||||||||| |||||||    
T  47790291 tcagttttctgttttcatctttgtaagagctttgagctcatcattttccagttaaataatac 47790230  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 20293300 - 20293145
Alignment:
Q  5 cattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttca 104  Q
    |||| |||||||||  |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||        
T  20293300 cattcagaaagtttgctaagagttgtttaggagagaagttctctcttgtataggagcttagctctggtaggagttctctgaactctggtttatcct---- 20293205  T
Q  105 tttcagttttctgttgttatcattgtaagagctttcagctcaccgttttccagttacataa 165  Q
     |||||||||||||| | || ||| ||||||| || |||||||| |||||| |||| ||||    
T  20293204 -ttcagttttctgttttcataattataagagccttgagctcaccattttcctgttaaataa 20293145  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 21079931 - 21079776
Alignment:
Q  5 cattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttca 104  Q
    |||| |||||||||  |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||        
T  21079931 cattcagaaagtttgctaagagttgtttaggagagaagttctctcttgtataggagcttagctctggtaggagttctctgaactctggtttatcct---- 21079836  T
Q  105 tttcagttttctgttgttatcattgtaagagctttcagctcaccgttttccagttacataa 165  Q
     |||||||||||||| | || ||| ||||||| || |||||||| |||||| |||| ||||    
T  21079835 -ttcagttttctgttttcataattataagagccttgagctcaccattttcctgttaaataa 21079776  T

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Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 13955836 - 13955753
Alignment:
Q  21 taagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttca 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13955836 taagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggttaatcctttca 13955753  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 2108371 - 2108287
Alignment:
Q  11 gaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctgg-taggagttctctgaactctggtt 94  Q
    |||||| |||||||||||  ||||||||||| || |||||||||||||||| ||||||||| |||||||||   |||||||||||    
T  2108371 gaaagtattttaagagtttgttaggagagaaattttctctggtctaggagcctagctctggttaggagttcatagaactctggtt 2108287  T

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Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 19058944 - 19058791
Alignment:
Q  7 ttaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatt 106  Q
    ||||| |||||| ||||||||||||||||||| ||||   ||||||||||||||| |||||||||||||||||||||   |||||||||||||||||| |    
T  19058944 ttaaggaagtttgttaagagttgtttaggagataagt---ctctggtctaggagcctagctctggtaggagttctcttccctctggtttatcctttcaat 19058848  T
Q  107 tcagttttctgttgttatcattgtaagagctttcagctcaccgttttccagttacataatac 168  Q
    |     ||||||| | ||||||||||||||||| |||||||| ||||||||||| |||||||    
T  19058847 t-----ttctgttttcatcattgtaagagctttgagctcaccattttccagttaaataatac 19058791  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 29355420 - 29355339
Alignment:
Q  12 aaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggt 93  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  29355420 aaagtttgttaagagttgtttaggagagaagttctatctggtctaggagcttagctctggtaggagttctctgagctctggt 29355339  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 7492158 - 7492223
Alignment:
Q  43 ttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttc 108  Q
    |||||||||||||| ||||||||||||||||||  ||||||||| ||| ||||||| |||| ||||    
T  7492158 ttctctctggtctacgagcttagctctggtaggtattctctgaattctagtttatcttttcgtttc 7492223  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 29355347 - 29355313
Alignment:
Q  64 agctctggtaggagttctctgaactctggtttatc 98  Q
    |||||||||||||||||||||||||||||||||||    
T  29355347 agctctggtaggagttctctgaactctggtttatc 29355313  T

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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 23219091 - 23218993
Alignment:
Q  5 cattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttc 103  Q
    |||| ||||||||| | | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23219091 cattcagaaagtttgtcatgagttgtttaggagagaagttctctctgatctaggagcttagctctggtaggagttctctgaactctggtttatcatttc 23218993  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 44672821 - 44672756
Alignment:
Q  44 tctctctggtctaggagcttagctctgg-taggagttctctgaactctggtttatc-ctttcattt 107  Q
    |||||||||||||||||| ||||||||| |||||||||   ||||||||||||||| |||||||||    
T  44672821 tctctctggtctaggagcatagctctggttaggagttcatagaactctggtttatctctttcattt 44672756  T

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Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 29403731 - 29403621
Alignment:
Q  5 cattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatccttt-c 103  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||| |||||||||| ||| |    
T  29403731 cattcagaaagtttattaagagttgtttaggagagaagttctctctggtcttggagcttggctcgggtagaagttctctgaaccctggtttatcatttcc 29403632  T
Q  104 atttcagtttt 114  Q
    |||||||||||    
T  29403631 atttcagtttt 29403621  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 20039559 - 20039641
Alignment:
Q  21 taagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttc 103  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  20039559 taagagttgtctaggagagaagttctttctggtctaggagcttagctctggtaggagttctctaaactctggtttatcatttc 20039641  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 34624308 - 34624211
Alignment:
Q  5 cattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttc 103  Q
    |||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  34624308 cattaagaaagtttgt-aagagttgtttaggagaaaagttgtctctggtctaggagcttagctctggtaggagttctctgaactatggttaatcatttc 34624211  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 11375487 - 11375416
Alignment:
Q  70 ggtaggagttctctgaactctggtttatcctttcatttcagttttctgttgttatcattgtaagagctttcagctca 146  Q
    ||||||||||||||||||||||||||||||     || |||||||||||| | ||||| ||||||||||| ||||||    
T  11375487 ggtaggagttctctgaactctggtttatcc-----ttccagttttctgttttcatcatggtaagagctttgagctca 11375416  T

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Target: scaffold0692 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 5053 - 5006
Alignment:
Q  31 ttaggagagaagttctctctggtctaggagcttagctctggtaggagt 78  Q
    |||| ||||| ||||||||| |||||||||| ||||||||||||||||    
T  5053 ttagcagagatgttctctctagtctaggagcctagctctggtaggagt 5006  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 43575459 - 43575487
Alignment:
Q  70 ggtaggagttctctgaactctggtttatc 98  Q
    |||||||||||||||||||||||||||||    
T  43575459 ggtaggagttctctgaactctggtttatc 43575487  T

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