View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8117_low_4 (Length: 413)
Name: NF8117_low_4
Description: NF8117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8117_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 8947212 - 8946832
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8947212 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
8947113 |
T |
|
| Q |
120 |
gattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaat |
219 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8947112 |
gattgactcaggtgtttggcccgagagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgaaaat |
8947013 |
T |
|
| Q |
220 |
accaacaattcatcattttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaactaacacaattttga |
319 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | || ||| || | || | | || ||||| ||| |
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| T |
8947012 |
agcaacaattcatcattttgcaacaagaaactcattggagcaagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtga |
8946913 |
T |
|
| Q |
320 |
actccacacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgggaatcaagttgatggtgcatcattct |
400 |
Q |
| |
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|| | ||||||||||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||||| |||| |
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| T |
8946912 |
acactacacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttct |
8946832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 400
Target Start/End: Original strand, 8973283 - 8973663
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
119 |
Q |
| |
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|||| ||| ||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||| | | ||| ||||||||||| ||||| | |
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| T |
8973283 |
tgaagcttgacacaactcactcaccacaattccttggccttaattcatacaaaggggcatggccagcttctgattatggcaaagatgtcattgttggtat |
8973382 |
T |
|
| Q |
120 |
gattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaat |
219 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||| || ||||||| ||| || |||| |||||||||||||||||| | ||||||||||||| |||| |
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| T |
8973383 |
gattgataccggtgtttggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaat |
8973482 |
T |
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| Q |
220 |
accaacaattcatcattttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaactaacacaattttga |
319 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8973483 |
accaacaattcatctttttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaactaacacaattttga |
8973582 |
T |
|
| Q |
320 |
actccacacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgggaatcaagttgatggtgcatcattct |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8973583 |
actccacacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgggaatcaagttgatggtgcatcattct |
8973663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 20 - 400
Target Start/End: Original strand, 8961881 - 8962261
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
119 |
Q |
| |
|
|||| ||| |||||||| ||||||| ||||||||||| || ||||| | |||||| |||| ||||||| | | ||| ||||||||||| ||||| | |
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| T |
8961881 |
tgaagcttgacacaacatactcacctcaattccttggtcttaatccctacaaaggggtgtggctagcttctgattatggaaaagatgtcattgttggtgt |
8961980 |
T |
|
| Q |
120 |
gattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaat |
219 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||| ||||||||||||| |||| |
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|
| T |
8961981 |
gattgataccggtgtttggccagaaagtgaaagtttcaatgataatggatttactaaaattccttcaaaatggaaagggaaattatgtcaatttgaaaat |
8962080 |
T |
|
| Q |
220 |
accaacaattcatcattttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaactaacacaattttga |
319 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||| | || | | | || |||| ||| |
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| T |
8962081 |
accaacaattcatctttttgcaacaaaaaactcattggagcaagattcttcaacaaagggttcttggcgatgaattccaccattgatacaacaacagtga |
8962180 |
T |
|
| Q |
320 |
actccacacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgggaatcaagttgatggtgcatcattct |
400 |
Q |
| |
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|||| |||||||||||| |||||||||| || |||||||||||||| | ||| |||||||| ||| ||||||||||||||| |
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| T |
8962181 |
actctacacgtgacacagatggtcatggaacccacacttcaacaacggtagcggggaatcaggttaatggtgcatcattct |
8962261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 374
Target Start/End: Original strand, 8957087 - 8957233
Alignment:
| Q |
225 |
caattcatcattttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaactaacacaattttgaactcc |
324 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || | ||||||||||||||| || | ||||||||||| |||| | | ||| |||||| |
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| T |
8957087 |
caattcatctctttgcaacaagaaactcattggtgccaaattcttcaacaaaggattgcaatccaaatatccaaacataac---cttaggtttaaactcc |
8957183 |
T |
|
| Q |
325 |
acacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgg |
374 |
Q |
| |
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|| ||||| || ||||||||||||| ||||||||| ||||||||||||| |
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| T |
8957184 |
actcgtgattcacatggtcatgggactcacacttcatcaacagcagctgg |
8957233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 21688363 - 21687971
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
119 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| |||||||| ||||||| | ||||||||||||| ||||| | |||||| ||||| ||||| ||||| | |
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|
| T |
21688363 |
tgaagcttgacacaacacactcacctcaatttcttggccttaatccatatagaggggcatggccaacttctgattttggtaaagatatcattgttggtgt |
21688264 |
T |
|
| Q |
120 |
gattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaat |
219 |
Q |
| |
|
|| ||| | ||||||||||| |||||||||||||||| ||| |||||||||||||||| || |||||||||||||| | ||||||||||||| ||| |
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|
| T |
21688263 |
aatagacactggtgtttggccagaaagtgaaagttttagagatgatggaatgactaaaataccctcaaaatggaaaggccaattatgtcaatttgagaat |
21688164 |
T |
|
| Q |
220 |
accaa------------caattcatcattttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaacta |
307 |
Q |
| |
|
|||| ||||| ||| || |||||||||||||||||||||||||| |||||||||||||| || ||||||||| | | || | | || |
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|
| T |
21688163 |
tccaacatccagtcaatcaatttatctttgtgcaacaagaaactcattggagctaggttcttcaacaaaggcttcttggcaaaacactccaacattagta |
21688064 |
T |
|
| Q |
308 |
acacaattttgaactccacacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgggaatcaagttgatggtgcatcattct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| | |||||||||||||||| |||| |
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|
| T |
21688063 |
caacaattttgaactccacacgtgacacaaacggtcacgggacacatacttcaacaacagcagctggaagcaaagttgatggtgcatctttct |
21687971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 374
Target Start/End: Complemental strand, 34963947 - 34963608
Alignment:
| Q |
29 |
acacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactc |
128 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| ||| || |||| | ||| ||||| ||| |||| | ||| | ||| |||||||| | |
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|
| T |
34963947 |
acacaacacattcacctcaattccttggcctcaatcccaacataggcgcttggcatgattcgaagttcggtgaagacataattgtaggtgtgattgacac |
34963848 |
T |
|
| Q |
129 |
aggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaa---- |
224 |
Q |
| |
|
||| |||||||| |||||||| || || || ||| |||||||||||||||| ||||||||||||||||| |||| || ||||| || |
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|
| T |
34963847 |
aggagtttggccagaaagtgagagcttcaaagatgatggaatgactaaaattccttcaaaatggaaagga---------caatgtgaaaatagcattcat |
34963757 |
T |
|
| Q |
225 |
--caattcatcattttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaactaacacaattttgaact |
322 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| || || ||||||||||| || | || | | || |||| |
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|
| T |
34963756 |
ttcaattcatctctttgcaacaagaaactcattggagctaaattcttcaacagaggattattagcaaaatatcctaacatcac---cttaggattaaact |
34963660 |
T |
|
| Q |
323 |
ccacacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgg |
374 |
Q |
| |
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|||||||||||||| | |||||||| || || |||||||||||||||||||| |
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|
| T |
34963659 |
ccacacgtgacacagaaggtcatggaactcatacttcaacaacagcagctgg |
34963608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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