View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8117_low_6 (Length: 374)

Name: NF8117_low_6
Description: NF8117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8117_low_6
NF8117_low_6
[»] chr3 (1 HSPs)
chr3 (8-356)||(38953078-38953426)
[»] chr8 (2 HSPs)
chr8 (10-138)||(34316327-34316455)
chr8 (253-342)||(34316028-34316117)
[»] chr1 (3 HSPs)
chr1 (248-341)||(2893135-2893228)
chr1 (248-341)||(2888540-2888633)
chr1 (248-341)||(2904643-2904736)
[»] chr4 (2 HSPs)
chr4 (253-330)||(54895038-54895115)
chr4 (268-330)||(54905479-54905541)
[»] chr7 (1 HSPs)
chr7 (257-321)||(48870455-48870519)


Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 8 - 356
Target Start/End: Original strand, 38953078 - 38953426
Alignment:
Q  8 tcctttttctgaagacatgttgccatatatttcgcaactctttcatccttataggcttaaggagataatcacatgcaccgtgttggacgcctttcatcac 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38953078 tcctttttctgaagacatgttgccatatatttcgcaactctttcatccttatgggcttaaggagataatcacatgcaccgtgttggacgcctttcatcac 38953177  T
Q  108 cctgcttgtttctccatccacggacatcactgaatagcattgcaaagtgtgatttgtcagaggggcggcttttaatcaaattgatcaaaggattataatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38953178 cctgcttgtttctccatccacggacatcactgaatagcattgcaaagtgtgatttgtcagaggggcggcttttaatcaaattgatcaaaggattataatg 38953277  T
Q  208 ttatcattgaacaaaaaatgtgaatatattattgatagagaactgactaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccg 307  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38953278 ttatcattgaacaaaatatgtgaatatattattgatagagaactgactaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccg 38953377  T
Q  308 tccatgtcaggcatgttaacatcgctgatcactatatcgtatccgtctt 356  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38953378 tccatgtcaggcatgttaacatcgctgatcactatatcgtatccatctt 38953426  T

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Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 34316455 - 34316327
Alignment:
Q  10 ctttttctgaagacatgttgccatatatttcgcaactctttcatccttataggcttaaggagataatcacatgcaccgtgttggacgcctttcatcaccc 109  Q
    |||||||| ||||||||||||||||| |||||||  ||||||||||||||||||||||| | |||||||||||| || ||||| || |||||||||||||    
T  34316455 ctttttcttaagacatgttgccatatgtttcgcacttctttcatccttataggcttaagcaaataatcacatgctccatgttgaacacctttcatcaccc 34316356  T
Q  110 tgcttgtttctccatccacggacatcact 138  Q
    |||||||||||||||| || |||||||||    
T  34316355 tgcttgtttctccatcaacagacatcact 34316327  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 253 - 342
Target Start/End: Complemental strand, 34316117 - 34316028
Alignment:
Q  253 actaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatcgctgatcactat 342  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  34316117 actaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgtttacatcgctgatcactat 34316028  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 2893228 - 2893135
Alignment:
Q  248 aactgactaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatcgctgatcacta 341  Q
    |||| ||| |||||||| || |||||||||||||||||| |||||||||| || || ||||||||||| ||||| | ||||| |||||| ||||    
T  2893228 aacttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccgtccatgtctggcatatgaacattgctgattacta 2893135  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 2888633 - 2888540
Alignment:
Q  248 aactgactaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatcgctgatcacta 341  Q
    |||| ||| |||||||| | ||||||||||||||||||| |||||||||| || || || |||||||| ||||| | ||||| |||||| ||||    
T  2888633 aacttacttatgacaggtaaatccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattacta 2888540  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 2904736 - 2904643
Alignment:
Q  248 aactgactaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatcgctgatcacta 341  Q
    |||| ||| |||||||| || |||||||||||||||||| |||||||||| || || || |||||||| ||||| | ||||| |||||| ||||    
T  2904736 aacttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattgctgattacta 2904643  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 54895038 - 54895115
Alignment:
Q  253 actaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatc 330  Q
    |||||||| ||| || ||||||||||||||||| |||||||| || |||||||| ||||| || |||||||| |||||    
T  54895038 actaatgaaaggcaggtccatctcaagtccaacttgctcaaggagcttgaaaccatccatttctggcatgtttacatc 54895115  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 54905479 - 54905541
Alignment:
Q  268 atccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcatgttaacatc 330  Q
    |||||| ||||||||||| |||||||| || ||||| || |||||||| |||||| |||||||    
T  54905479 atccatttcaagtccaacttgctcaaggagcttgaagccatccatgtctggcatgctaacatc 54905541  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 48870455 - 48870519
Alignment:
Q  257 atgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcat 321  Q
    |||||||| || |||||||||||||||||| |||||||||| || || || |||||||| |||||    
T  48870455 atgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcat 48870519  T

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