View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8117_low_7 (Length: 357)

Name: NF8117_low_7
Description: NF8117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8117_low_7
NF8117_low_7
[»] chr3 (16 HSPs)
chr3 (14-343)||(34526797-34527126)
chr3 (63-343)||(27617451-27617737)
chr3 (63-321)||(34506236-34506494)
chr3 (125-321)||(27633104-27633300)
chr3 (125-321)||(34517887-34518083)
chr3 (63-137)||(34463227-34463301)
chr3 (63-137)||(34478306-34478379)
chr3 (107-309)||(34508814-34509016)
chr3 (107-158)||(27622785-27622836)
chr3 (16-66)||(34463100-34463150)
chr3 (16-66)||(34474225-34474275)
chr3 (14-66)||(27617285-27617337)
chr3 (67-99)||(27628726-27628758)
chr3 (22-66)||(34478149-34478193)
chr3 (14-66)||(34506070-34506122)
chr3 (23-63)||(34517682-34517722)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 343
Target Start/End: Original strand, 34526797 - 34527126
Alignment:
Q  14 cacacacgggacaattctgatataggaacagtgtagcagtcattcagatatcaggacaagtgcactatatcaagctgatacataaattctctgttcaatt 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34526797 cacacacaggacaattctgatataggaacagtgtagcagtcattcagatatcaggacaagtgcactatatcaagctgatacataaattctctgttcaatt 34526896  T
Q  114 tcattagcagctaagcaaggacattcatttttacaaattataacaatgacaatagtctagttatcattcaatcatgaaatatcggaaaatgaaaccaaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34526897 tcattagcagctaagcaaggacattcatttttacaaattataacaatgacaatagtctagttatcattcaatcatgaaatatcggaaaatgaaaccaaat 34526996  T
Q  214 ctaacaaaaacccaaagaaatacttcagtaacaaattctgctaaacataaattatgaaattcaggaggtcataccatattatatgcatcataatctactg 313  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34526997 ctaacaaaaacccaaagaaatacttcagtaacaagttctgctaaacataaattatgaaattcaggaggtcataccatattatatgcatcataatctactg 34527096  T
Q  314 aacggtcagttgcaacttcaatgttgaaat 343  Q
    |||||||||||| |||||||||||||||||    
T  34527097 aacggtcagttgaaacttcaatgttgaaat 34527126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 63 - 343
Target Start/End: Original strand, 27617451 - 27617737
Alignment:
Q  63 atcaggacaagtgcactatatcaagctgatacataaattctctgttcaatttcattagcagctaagcaaggacattcatttttacaaattataacaatga 162  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||     
T  27617451 atcaggacaagtgcactatatcaagctgacacataaattttcttttcaatttcattagcagctaagcaaggacattcattataacaaattataacaatgt 27617550  T
Q  163 caatagtctagttatcattcaatcatgaaatatcggaaaatgaaaccaaatctaacaaaaacccaaagaaatacttcagtaacaaattctgctaaacata 262  Q
    ||||||||  ||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27617551 caatagtcccgttatcattcaatcaagaaatatcggaaaagaaaaccaaatctaacaaaaacccaaagaaatacttcagtaacaagttctgctaaacata 27617650  T
Q  263 aattatgaaattcaggaggtcataccatattatatgcatcataatctactgaacggtc------agttgcaacttcaatgttgaaat 343  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||      ||||| |||||||||||||||||    
T  27617651 aattataaaattcaggaggtcatgccatattatatgcatcataatctaccgaacggtcacggctagttgaaacttcaatgttgaaat 27617737  T

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Target: chr3; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 63 - 321
Target Start/End: Original strand, 34506236 - 34506494
Alignment:
Q  63 atcaggacaagtgcactatatcaagctgatacataaattctctgttcaatttcattagcagctaagcaaggacattcatttttacaaattataacaatga 162  Q
    |||||||||||||||||||||||| |||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  34506236 atcaggacaagtgcactatatcaaactgacacagaaattttcttttcaatttcattagcagctaagcaaggacattcattttaacaaattataacaatgt 34506335  T
Q  163 caatagtctagttatcattcaatcatgaaatatcggaaaatgaaaccaaatctaacaaaaacccaaagaaatacttcagtaacaaattctgctaaacata 262  Q
    ||||||||   |||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  34506336 caatagtcccattatcattcaatcaagaaatatcggaaaagaaaaccaaatctaacaaaaacccaaataaatacttcagtaacaagttctgctaaacata 34506435  T
Q  263 aattatgaaattcaggaggtcataccatattatatgcatcataatctactgaacggtca 321  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  34506436 aattataaaactcaggaggtcatgccatattatatgcatcataatctaccgaacggtca 34506494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 125 - 321
Target Start/End: Original strand, 27633104 - 27633300
Alignment:
Q  125 taagcaaggacattcatttttacaaattataacaatgacaatagtctagttatcattcaatcatgaaatatcggaaaatgaaaccaaatctaacaaaaac 224  Q
    |||||||||||||||||||||||| |||||||||||| ||||| || |||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  27633104 taagcaaggacattcatttttacagattataacaatgtcaataatccagttatcattcaatcaagaaatatcggaatatgaaaccaaatctaacaaaaac 27633203  T
Q  225 ccaaagaaatacttcagtaacaaattctgctaaacataaattatgaaattcaggaggtcataccatattatatgcatcataatctactgaacggtca 321  Q
     |||||||||||||||| || || ||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27633204 tcaaagaaatacttcagaaataagttctgctaaacataagttataaaattcaggaggtcataccgtattatatgcatcataatctactgaacggtca 27633300  T

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Target: chr3; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 125 - 321
Target Start/End: Original strand, 34517887 - 34518083
Alignment:
Q  125 taagcaaggacattcatttttacaaattataacaatgacaatagtctagttatcattcaatcatgaaatatcggaaaatgaaaccaaatctaacaaaaac 224  Q
    |||||||||||||||||||||||| |||||||||||  ||||| || |||||||||||||||| |||||||||||| ||||||||||||| |||||||||    
T  34517887 taagcaaggacattcatttttacagattataacaatatcaataatccagttatcattcaatcaagaaatatcggaatatgaaaccaaatccaacaaaaac 34517986  T
Q  225 ccaaagaaatacttcagtaacaaattctgctaaacataaattatgaaattcaggaggtcataccatattatatgcatcataatctactgaacggtca 321  Q
     |||||||||||||||| || || ||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34517987 tcaaagaaatacttcagaaataagttctgctaaacataagttataaaattcaggaggtcataccgtattatatgcatcataatctactgaacggtca 34518083  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 34463227 - 34463301
Alignment:
Q  63 atcaggacaagtgcactatatcaagctgatacataaattctctgttcaatttcattagcagctaagcaaggacat 137  Q
    |||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||||||| |||||||||||||    
T  34463227 atcaggacaagtgcactacatcaagctgatacagaaattttatgttcaatttcattagcaggtaagcaaggacat 34463301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 34478306 - 34478379
Alignment:
Q  63 atcaggacaagtgcactatatcaagctgatacataaattctctgttcaatttcattagcagctaagcaaggacat 137  Q
    ||||||||| |||||||||||||||||| || ||||| | | |||||||||||||||| |||||||||| |||||    
T  34478306 atcaggaca-gtgcactatatcaagctgctatataaaatttttgttcaatttcattagaagctaagcaaagacat 34478379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 309
Target Start/End: Original strand, 34508814 - 34509016
Alignment:
Q  107 ttcaatttcattagcagctaagcaaggacattcatttttacaaattataacaatgacaatagtctagttatcattcaatcatgaaatatcggaaaatgaa 206  Q
    ||||||||||||| ||||||||||||||  |||| ||||| |||||||||||||  ||| |  |  ||||||| ||||||| | ||| |  ||||| |||    
T  34508814 ttcaatttcattaacagctaagcaaggaggttcaattttataaattataacaatctcaacatgccggttatcaatcaatcaaggaatgtatgaaaaggaa 34508913  T
Q  207 accaaatctaacaaaaacccaaagaaatacttcagtaacaaattctgctaaacataaattatgaaattcaggaggtcataccatattatatgcatcataa 306  Q
    || ||||||| |||||||  |||  |||||||||| |  || |||   ||| |||||| ||  ||||  |||||||||||||||| ||  ||||||||||    
T  34508914 acaaaatctagcaaaaacttaaaacaatacttcagcataaagttccattaagcataaaatacaaaatcaaggaggtcataccatagtaattgcatcataa 34509013  T
Q  307 tct 309  Q
    |||    
T  34509014 tct 34509016  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 27622785 - 27622836
Alignment:
Q  107 ttcaatttcattagcagctaagcaaggacattcatttttacaaattataaca 158  Q
    ||||||||||||| ||||||||||||||| |||| ||||| |||||||||||    
T  27622785 ttcaatttcattaacagctaagcaaggacgttcaattttataaattataaca 27622836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 34463100 - 34463150
Alignment:
Q  16 cacacgggacaattctgatataggaacagtgtagcagtcattcagatatca 66  Q
    ||||| |||||| ||||||||| |||||||| |||||||||||||||||||    
T  34463100 cacacaggacaaatctgatatatgaacagtgaagcagtcattcagatatca 34463150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 34474225 - 34474275
Alignment:
Q  16 cacacgggacaattctgatataggaacagtgtagcagtcattcagatatca 66  Q
    ||||| ||| || |||||||||||| ||||| |||||||||||||||||||    
T  34474225 cacacaggataaatctgatataggagcagtgaagcagtcattcagatatca 34474275  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 27617285 - 27617337
Alignment:
Q  14 cacacacgggacaattctgatataggaacagtgtagcagtcattcagatatca 66  Q
    ||||||| |||||| |||||||||||||||||| |||| |||||  |||||||    
T  27617285 cacacacaggacaaatctgatataggaacagtgaagcattcatttcgatatca 27617337  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 27628726 - 27628758
Alignment:
Q  67 ggacaagtgcactatatcaagctgatacataaa 99  Q
    ||||| |||||||||||||||||||||||||||    
T  27628726 ggacatgtgcactatatcaagctgatacataaa 27628758  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 34478149 - 34478193
Alignment:
Q  22 ggacaattctgatataggaacagtgtagcagtcattcagatatca 66  Q
    |||||| ||||||||||||||||||  ||||||| ||||||||||    
T  34478149 ggacaaatctgatataggaacagtgatgcagtcactcagatatca 34478193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 34506070 - 34506122
Alignment:
Q  14 cacacacgggacaattctgatataggaacagtgtagcagtcattcagatatca 66  Q
    ||||||| |||||| |||||||||||||||||| |||| |||||  |||||||    
T  34506070 cacacacaggacaaatctgatataggaacagtgaagcattcatttcgatatca 34506122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 34517682 - 34517722
Alignment:
Q  23 gacaattctgatataggaacagtgtagcagtcattcagata 63  Q
    ||||| |||||||||||||||||| |||||||| |||||||    
T  34517682 gacaaatctgatataggaacagtgaagcagtcactcagata 34517722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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