View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8117_low_8 (Length: 356)
Name: NF8117_low_8
Description: NF8117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8117_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23469742 - 23469521
Alignment:
| Q |
1 |
atctgaagactcgtgcatgacatggttcttacactgatgaaaagttaatggaaatagggtgtaatttgccatcaaaattggactacattcctactacttg |
100 |
Q |
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| T |
23469742 |
atctgaagactcgtccatgacatggttcttacc--gatgaaaagttaatggaaatagggtgtaatttgccatcaaaattggactacattcctactacttg |
23469645 |
T |
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| Q |
101 |
aggatgaggcctaacttttctttc---aaattttgcttcatgttacatttccttatattttcttcatgttacatttccttcaataaagtaagaacctgga |
197 |
Q |
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| T |
23469644 |
aggatgaggcctaacttttctttcctcaaattttgcttcatgttacatttccttatattttcttcatgttacatttccttcaataaagtaagaacctgga |
23469545 |
T |
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| Q |
198 |
gatattcaaaggattagaaagaag |
221 |
Q |
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| T |
23469544 |
gatattcaaaggattagaaagaag |
23469521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 23402140 - 23401992
Alignment:
| Q |
4 |
tgaagactcgtgcatgacatggttcttacactgatgaaaagttaatggaaatagggtgtaatttgccatcaaaattggactacattcctactacttgagg |
103 |
Q |
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| T |
23402140 |
tgaagactcgtgcatgacaagattcttac--tgatgaaaagttaatggacatagggtgtaatttgccataaaatttggactacgttcttactctttgagg |
23402043 |
T |
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| Q |
104 |
atgaggcctaacttttctt---tcaaattttgcttcatgttacatttcctt |
151 |
Q |
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| T |
23402042 |
atgagacctaacttttctttcctcaaatttttcttcatgttacatttcctt |
23401992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 23469495 - 23469405
Alignment:
| Q |
248 |
cagagtgagaattatttcacgtagaaacccctttctatgtaagaaggattgcacgtaaagaattttacattgtgctggatagtgtagagaa |
338 |
Q |
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| T |
23469495 |
cagagtgagaattattgcacgtagaaacccctttctctgtgagaaggattgcacgtaaagaattttacattgtgctggatagtgtagagaa |
23469405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 23401926 - 23401836
Alignment:
| Q |
248 |
cagagtgagaattatttcacgtagaaacccctttctatgtaagaaggattgcacgtaaagaattttacattgtgctggatagtgtagagaa |
338 |
Q |
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| T |
23401926 |
cagagtgagaattattgcacgtagaaacccctttgtctgtgagaaggattgcacgtaaagaatctttcattgtgctggatagtgtagagaa |
23401836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 23402014 - 23401948
Alignment:
| Q |
155 |
ttttcttcatgttacatttccttcaataaagtaagaacctggagatattcaaaggattagaaagaag |
221 |
Q |
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| T |
23402014 |
ttttcttcatgttacatttccttcaataaagtaagaacctggagatattcaaaggattagaaagaag |
23401948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 332
Target Start/End: Complemental strand, 23387222 - 23387159
Alignment:
| Q |
269 |
tagaaacccctttctatgtaagaaggattgcacgtaaagaattttacattgtgctggatagtgt |
332 |
Q |
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| T |
23387222 |
tagaatcccctttctccgtgagaaggattgcacgtaaaaaagttttcattgtgttggatagtgt |
23387159 |
T |
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