View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8117_low_9 (Length: 346)
Name: NF8117_low_9
Description: NF8117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8117_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 38483894 - 38483592
Alignment:
| Q |
1 |
aaggataagctctatcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483894 |
aaggataagctctatcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaa |
38483795 |
T |
|
| Q |
101 |
cgacctccgttcaacaaaacctgtcttcccaacacgatttccatcgaaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctctta |
200 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38483794 |
cgacctccgttcaacaaaacccgtcttcccaacacgatttccatcgaaaaaactactcccaatatcaataggccatttcaatttctcaaaacacctctta |
38483695 |
T |
|
| Q |
201 |
ctccaaaaatactcatttatatcatcataatttctccatctcgtatgtggttccgttccattaccactcctaatctcagcctcaaacttcaccattttat |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483694 |
ctccaaaaatactcatttatatcatcataatttctccatcttgtatgtggttccgttccattaccactcctaatctcagcctcaaacttcaccattttat |
38483595 |
T |
|
| Q |
301 |
aaa |
303 |
Q |
| |
|
||| |
|
|
| T |
38483594 |
aaa |
38483592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 3682910 - 3682860
Alignment:
| Q |
189 |
aaacacctcttactccaaaaatactcatttatatcatcataatttctccat |
239 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
3682910 |
aaacacctcctactccaaaaatactcatttatatcatcataattcctccat |
3682860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 30118257 - 30118047
Alignment:
| Q |
40 |
cttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaacacgatt |
139 |
Q |
| |
|
||||||||||||| | |||||| | ||||||||| |||||||||| ||||| |||||||||||| ||| | |||||||| || ||||| |||||| | || |
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|
| T |
30118257 |
cttgaagaaacaacaccaacataatccaaagcctgtcaaaactccgaaacagattccaaaacgatctctgctcaacaaatccggtcttaccaacatgttt |
30118158 |
T |
|
| Q |
140 |
tccatcg------------aaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaatactcatttatatcatca |
227 |
Q |
| |
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|| | |||||| ||||||| | |||| ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
30118157 |
ccccttaccaacagtagtaaaaaaattactcccaacatcaggaggccatttcatcttctcaaaacacctcctactccaaaaatactcattaatatcatca |
30118058 |
T |
|
| Q |
228 |
taatttctcca |
238 |
Q |
| |
|
||||||||||| |
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|
| T |
30118057 |
taatttctcca |
30118047 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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