View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8118_high_1 (Length: 274)
Name: NF8118_high_1
Description: NF8118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8118_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 267
Target Start/End: Original strand, 7181977 - 7182219
Alignment:
| Q |
23 |
tgccctactactgttgttacaatttcaagaatttgcactttattttattttaaaaatttgcaactgtaaattctttatgctcactttgacacccaaannn |
122 |
Q |
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| T |
7181977 |
tgccctactactgttgttacaatttcaagaatttgcactttattttattttaaaaatttgcaactgtaaattctttatgctcactttgacacccaaattt |
7182076 |
T |
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| Q |
123 |
nnnngttaaaacttcgccacagtttctagaaaataattctaatgatataattatgaggggacaacaatattttagttttcctgaaatactcaaaatctca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7182077 |
ttttgttaaaacttcgccacagtttctagaaaataattctaatgatataattatgaggggacaacaatattttagttttcttgaaatactcaaaatctca |
7182176 |
T |
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| Q |
223 |
aggggggacttgatttacatttgacaaatttctgcagaataatct |
267 |
Q |
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| T |
7182177 |
a-gtgggacttga-ttacatttgacacatttctggagaataatct |
7182219 |
T |
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