View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8118_low_2 (Length: 248)
Name: NF8118_low_2
Description: NF8118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8118_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 3576116 - 3575897
Alignment:
| Q |
19 |
catatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacag |
118 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576116 |
catatagcaaggatactttgtgcgtggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacag |
3576017 |
T |
|
| Q |
119 |
cctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtgtatgacctcgagttcacg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3576016 |
cctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtggatgacctcgagttcacg |
3575917 |
T |
|
| Q |
219 |
gttcttggcaaatgtctctg |
238 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
3575916 |
gttcttggcaaatgtctctg |
3575897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 3569785 - 3569566
Alignment:
| Q |
19 |
catatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacag |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | |
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| T |
3569785 |
catatagcaaggatgctttgtgcatggactagacttgggttacccaagtagtcaagtccaccctcactaaagatttgggatcctgccttgaaccacacgg |
3569686 |
T |
|
| Q |
119 |
cctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtgtatgacctcgagttcacg |
218 |
Q |
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|||| ||||||| |||||||||||||| |||||||| ||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||| |
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| T |
3569685 |
cctcaccgaattgtacaccattgcgagataagagctcagggaagacacatcccaaggcacccaacatagcccatctactgtggatgacctcgagttcacg |
3569586 |
T |
|
| Q |
219 |
gttcttggcaaatgtctctg |
238 |
Q |
| |
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|||||||||||||||||||| |
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| T |
3569585 |
gttcttggcaaatgtctctg |
3569566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 3585105 - 3585321
Alignment:
| Q |
22 |
atagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacagcct |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3585105 |
atagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtccaccctcactaaagatttgagatcctgccttaaaccacacagcct |
3585204 |
T |
|
| Q |
122 |
cgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtgtatgacctcgagttcacggtt |
221 |
Q |
| |
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| |||||||||||||||||||||| |||||| || |||||||||||||| || || || ||||||||||||||||| || |||||||||||||||||||| |
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| T |
3585205 |
caccgaatttcacaccattgcgagccaagagttctgggaagacacatcctaaggcacccaacatagcccatctactatgaatgacctcgagttcacggtt |
3585304 |
T |
|
| Q |
222 |
cttggcaaatgtctctg |
238 |
Q |
| |
|
|||||||||||||||| |
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| T |
3585305 |
tttggcaaatgtctctg |
3585321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 3564137 - 3563918
Alignment:
| Q |
19 |
catatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||| |||| |
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|
| T |
3564137 |
catatagcaaggatgctttgtgcatggactagacttgggttacccaagtagtcaagcccaccctcactaaaaatttgggatcctgccttgaaccatacag |
3564038 |
T |
|
| Q |
119 |
cctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtgtatgacctcgagttcacg |
218 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||| |
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| T |
3564037 |
cctcgccgaatttgacaccattgcgagataagagctcagggaagacacatcccaaggcacccaacatagcccatctactgtggatgacctcgagttcacg |
3563938 |
T |
|
| Q |
219 |
gttcttggcaaatgtctctg |
238 |
Q |
| |
|
||| |||||||||||||||| |
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|
| T |
3563937 |
gtttttggcaaatgtctctg |
3563918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 3572832 - 3572630
Alignment:
| Q |
19 |
catatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
3572832 |
catatagcaaggatgctttgtgcatggactagacttggatttcccaagtagtcaagtccaccctcactaaagatttgagatcctgccttgaaccacacgg |
3572733 |
T |
|
| Q |
119 |
cctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtgtatgacctcgagttcacg |
218 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||||||| |
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|
| T |
3572732 |
cctcaccgaatttaacaccattgcgagccaagagctcagggaagacacatcccaaggctcccaacatagcccacctactgtgaatgacctctagttcacg |
3572633 |
T |
|
| Q |
219 |
gtt |
221 |
Q |
| |
|
||| |
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|
| T |
3572632 |
gtt |
3572630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 3577969 - 3577894
Alignment:
| Q |
22 |
atagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgag |
97 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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|
| T |
3577969 |
atagcaaggatgctttgtgcgtggactaggcttgggttacccaagtagtcaagccctccatcactaaagatttgag |
3577894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 13276063 - 13275968
Alignment:
| Q |
19 |
catatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccac |
114 |
Q |
| |
|
||||| |||||||||||||||||||| || || |||||||| ||||| ||||| || || ||||||||||||||||| || | |||||||||||| |
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|
| T |
13276063 |
catatggcaaggatgctttgtgcatgtacaagacttgggttgcccaaatagtctagcccaccctcactaaagatttgggacctggccttgaaccac |
13275968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 38357146 - 38356933
Alignment:
| Q |
25 |
gcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacagcctcgc |
124 |
Q |
| |
|
||||| ||||| || |||||||| | |||||||||||||||||||||||||| ||||| |||||||| || ||||| ||||||||||| |||||||| | |
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|
| T |
38357146 |
gcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagtccaccctcgctaaagatctgggatccggccttgaaccatacagcctcac |
38357047 |
T |
|
| Q |
125 |
cgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtgtatgacctcgagttcacggttctt |
224 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||| ||||| || ||||| || |||||||||||||| |
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|
| T |
38357046 |
cgaatttaacaccattgcgagacaaaagctctgggaaaacacatcccaaggctcccaacatagcccacctactatggatgacttcaagttcacggttctt |
38356947 |
T |
|
| Q |
225 |
ggcaaatgtctctg |
238 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
38356946 |
ggcgaatgtctctg |
38356933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 42602943 - 42602831
Alignment:
| Q |
25 |
gcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccacacagcctcgc |
124 |
Q |
| |
|
||||| ||||| || ||||||| ||| ||||||| ||||| |||||||| || |||||| ||||| || | || ||||| |||||||||||||| | |
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|
| T |
42602943 |
gcaagaatgctctgagcatggatcaggtttgggttgcccaaatagtcaaggccaccctcagagaagatctgggcaccagccttaaaccacacagcctcac |
42602844 |
T |
|
| Q |
125 |
cgaatttcacacc |
137 |
Q |
| |
|
||||||| ||||| |
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|
| T |
42602843 |
cgaatttaacacc |
42602831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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