View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8119_high_4 (Length: 327)
Name: NF8119_high_4
Description: NF8119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8119_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 34042836 - 34042694
Alignment:
| Q |
68 |
taccaaacccttcatggcttgcaagtccaagtcaatcttcttatctaaatccacctcattctaaataacaagatcaaatatttaaattacatgagctgct |
167 |
Q |
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| T |
34042836 |
taccaaacccttcatggcttgcaagtccaagtcaatcttcttatctaaatccacctcattctaaataacaagatcaaatatttaaattacatgagctgct |
34042737 |
T |
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| Q |
168 |
taacaatagacaatagaacttctgttcttaaatagtgaatttt |
210 |
Q |
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| T |
34042736 |
taacaatagacaatagaacttctgttcttaaatagtgaatttt |
34042694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 193 - 308
Target Start/End: Complemental strand, 34042641 - 34042526
Alignment:
| Q |
193 |
tcttaaatagtgaattttaatgatttcttttataattaataatatggagaggattctttatcnnnnnnntatatgtggagatgattctaactgattttaa |
292 |
Q |
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| T |
34042641 |
tcttaaatagtgaattttaatgatttcttttataattaataatatggagaggattctttatcaaaaaaatatatgtggagatgattctaactgattttaa |
34042542 |
T |
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| Q |
293 |
taatcctattatcttt |
308 |
Q |
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| T |
34042541 |
taatcctatcatcttt |
34042526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 34041145 - 34041080
Alignment:
| Q |
73 |
aacccttcatggcttgcaagtccaagtcaatcttcttatctaaatccacctcattctaaataacaa |
138 |
Q |
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| T |
34041145 |
aacccttcatgacttatgagtccaagtcaatcttcttatccaaatccacctcattttaaataacaa |
34041080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 34042861 - 34042822
Alignment:
| Q |
14 |
ttattctccacatatattattctaataccaaacccttcat |
53 |
Q |
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| T |
34042861 |
ttattctccacatatattattctaataccaaacccttcat |
34042822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 34040944 - 34040900
Alignment:
| Q |
208 |
tttaatgatttcttttataa-ttaataatatggagaggattcttt |
251 |
Q |
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| T |
34040944 |
tttaatgatttcttttataaattgataatatggagaggattcttt |
34040900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 34042686 - 34042651
Alignment:
| Q |
134 |
aacaagatcaaatatttaaattacatgagctgctta |
169 |
Q |
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| T |
34042686 |
aacaagatcaaatatttatattacatgagctgctta |
34042651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 34040887 - 34040847
Alignment:
| Q |
268 |
tggagatgattctaactgattttaataatcctattatcttt |
308 |
Q |
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| T |
34040887 |
tggagaggattttaactgattttaataatcctattctcttt |
34040847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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