View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8119_low_1 (Length: 481)
Name: NF8119_low_1
Description: NF8119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8119_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 47 - 464
Target Start/End: Original strand, 24224595 - 24225012
Alignment:
| Q |
47 |
tatagaaaacttgagttagtagcttagctaatagataactcagtgttaagttattggtattctatgaaactctaactgtatttgttagtcactttgttat |
146 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24224595 |
tatagaaaacttgagtcagtagcttagctaatagataactgagtgttgagttattggtattctatgaaacgctaactgtatttgttagtcactttgttat |
24224694 |
T |
|
| Q |
147 |
tttatcttattatctatattgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaag |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
24224695 |
tttatcttattatctatattgttaacatggtattcaaagcatgatctaatcctcattgaattgtttatcgctttcgctattgagttcccaaaagtttaag |
24224794 |
T |
|
| Q |
247 |
gaatgttgtgtgattgatttggtttaatttttaatgttggtcatttgttcggnnnnnnnntttatgattgaagaaaaagcatggttccttccgtcaattg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24224795 |
gaatgttgtgtgattgatttggtttaatttttaatgttggtcatttattcggaaaaaaaatttatgattgaagaaaaagcatggttccttccgtcaattg |
24224894 |
T |
|
| Q |
347 |
cttggtagaaacaaattagagaaactgggaacgtgatgtttgcttcgaaatggtaatttgcaacattccactaattggtattatttctttggatttttag |
446 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24224895 |
cttggtagaaacaaattagagaaattgggaacatgatgtttgcttcgaaatggtaatttgcaacattccactaattggtattatttctttggatttttag |
24224994 |
T |
|
| Q |
447 |
attcacggtgtgcatatt |
464 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24224995 |
attcacggtgtgcatatt |
24225012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 11096893 - 11096986
Alignment:
| Q |
92 |
ttaagttattggtattctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatattgttaacatggtatccaaag |
185 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| ||| |||||| |||||||||| | || |||| |||||||||||||||| |||| |||| |
|
|
| T |
11096893 |
ttaaggtataggtattctatgaaactctaactgtcttttttagtctctttgttattctctccgattagctatattgttaacatgatatctaaag |
11096986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 276
Target Start/End: Complemental strand, 17927870 - 17927761
Alignment:
| Q |
166 |
tgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatt |
265 |
Q |
| |
|
|||||||||||||| || |||||| ||| ||| || || |||||||| | ||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
17927870 |
tgttaacatggtatacagagcatggtttgatcgtctttaaattgtttgtagcttccgctattgagttttcaaaagttt-gggaatgttgtgtgattgatt |
17927772 |
T |
|
| Q |
266 |
tggtttaattt |
276 |
Q |
| |
|
||||||||||| |
|
|
| T |
17927771 |
tggtttaattt |
17927761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 165 - 275
Target Start/End: Original strand, 10740746 - 10740855
Alignment:
| Q |
165 |
ttgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgat |
264 |
Q |
| |
|
|||||||||||||||| | |||||| ||| |||||| |||||| | | | |||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10740746 |
ttgttaacatggtatcaagagcatggtttgatcctccttgaatgatctgtcgcttccgcagttgagttcccaaaagtttg-ggaatgttgtgtgattgat |
10740844 |
T |
|
| Q |
265 |
ttggtttaatt |
275 |
Q |
| |
|
||||||||||| |
|
|
| T |
10740845 |
ttggtttaatt |
10740855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 13166651 - 13166727
Alignment:
| Q |
216 |
gcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattgatttggtttaatttttaatgttggtcatttg |
293 |
Q |
| |
|
||||||||| ||| |||||||||| ||| ||||| ||||||||||||||||||||||||| || |||||||| |||| |
|
|
| T |
13166651 |
gcttccgcttttgtgttcccaaaaatttg-ggaattttgtgtgattgatttggtttaatttatagtgttggtcttttg |
13166727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 279
Target Start/End: Original strand, 9401768 - 9401883
Alignment:
| Q |
163 |
tattgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaaaagtttaaggaatgttgtgtgattg |
262 |
Q |
| |
|
|||||||||||||||||| | | | || | | |||||| ||||| | ||| | |||||| | |||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
9401768 |
tattgttaacatggtatcgagaacttgttctgatcctccttgaactatttgtctcttccgttgttgagttcccaaaaatttg-ggaatattgtgtgattg |
9401866 |
T |
|
| Q |
263 |
atttggtttaattttta |
279 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
9401867 |
atttggtttgattttta |
9401883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 3950609 - 3950652
Alignment:
| Q |
155 |
attatctatattgttaacatggtatccaaagcatgatttaatcc |
198 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||| |||| |
|
|
| T |
3950609 |
attatctatattgttaacatggtatcgaaagcatggtttgatcc |
3950652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 42631591 - 42631524
Alignment:
| Q |
99 |
attggtattctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatatt |
166 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
42631591 |
attgatattctatgaaactctaacagtttttgttagtctctttgttattctatctgattatctatatt |
42631524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 814396 - 814352
Alignment:
| Q |
90 |
tgttaagttattggtattctatgaaactctaactgtatttgttag |
134 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
814396 |
tgttaagctattggtattctatgaaactctagctgtctttgttag |
814352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 17749814 - 17749880
Alignment:
| Q |
107 |
tctatgaaactctaactgtatttgttagtcactttgttattttatcttattatctatattgttaaca |
173 |
Q |
| |
|
|||||||||| |||| || |||||||||| |||| ||||| | ||| ||||||||||||||||||| |
|
|
| T |
17749814 |
tctatgaaaccttaaccgtttttgttagtctctttattattctctctgattatctatattgttaaca |
17749880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 24725780 - 24725881
Alignment:
| Q |
138 |
ctttgttattttatcttattatctatattgttaacatggtatccaaagcatgatttaatcctcattgaattgtttattgcttccgctattgagttcccaa |
237 |
Q |
| |
|
|||| ||||| ||||| ||||||||| ||||||||||| |||| | ||| | |||| ||| || |||||| ||||| ||||| ||||||| ||||||| |
|
|
| T |
24725780 |
ctttattattctatctgattatctatgttgttaacatgatatcaagagcctaatttgatcgtccttgaatcatttataacttcctctattgaattcccaa |
24725879 |
T |
|
| Q |
238 |
aa |
239 |
Q |
| |
|
|| |
|
|
| T |
24725880 |
aa |
24725881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University