View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8119_low_12 (Length: 307)
Name: NF8119_low_12
Description: NF8119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8119_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 44348917 - 44349193
Alignment:
| Q |
15 |
atgaaacattattagctaaacttcaagtcattttaagaaagcctcaattatagattaaataaaaaacttgagatatatttacaagaaaggagaaaaaacc |
114 |
Q |
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| T |
44348917 |
atgaaacattattagctaaacttcaagtcattttaagaaagcctcaattatagattaaataaaaaacttgagatatatttacaagaaaggagaaaaaacc |
44349016 |
T |
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| Q |
115 |
tcaccctttctcgtttggctggatctttgaaggcgaaattgatgacatcctttgtgggaactatcttccactttggtattatatcttcaactttagtcaa |
214 |
Q |
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| T |
44349017 |
tcaccctttctcgtttggccggatctttgaaagcgaaattgatgacatcctttgtgggaactatcttccacttaggtattatatcttcaactttagtcaa |
44349116 |
T |
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| Q |
215 |
tatgttgatgacaacttggtgtggcttcatcttctctgatatctgcacatttgcataaaccatatttctctgttttt |
291 |
Q |
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| T |
44349117 |
tatgttgatgacaacttggtgtggcttcatcttctctgatatctgcacatttgcataaaccatatttctctgttttt |
44349193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 39562230 - 39562158
Alignment:
| Q |
115 |
tcaccctttctcgtttggctggatctttgaaggcgaaattgatgacatcctttgtgggaactatcttccactt |
187 |
Q |
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| T |
39562230 |
tcaccatttcccgtttggtgtgatctttgaaggctgaatcgatgacatcctttgtcggaactattttccactt |
39562158 |
T |
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