View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8119_low_13 (Length: 302)
Name: NF8119_low_13
Description: NF8119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8119_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 2 - 289
Target Start/End: Original strand, 1641196 - 1641479
Alignment:
| Q |
2 |
tcgagtttggtgtttgagtgacatgttagtagaagatattggtgcctgcccatttggttgataacctgttcagaataatatgaaagattatattaccaat |
101 |
Q |
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| T |
1641196 |
tcgagtttgtggtttgagtgacatgttagtagaagatattggtgcctgcccatttggttgataacctgttcagaataatatggaagattatattaccaat |
1641295 |
T |
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| Q |
102 |
tttctggagccattcctttcgcttttgcatttcgacaaaaaataaggatttcaacaatctttaacttcttatcaaatcctctccttttctcatccatcaa |
201 |
Q |
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| T |
1641296 |
tttctggagccattcctttcgcttttgcatttcgacaaaaaataaggatttcaacaatctttaacttcttatcaaatcctctccttttctcatccatcaa |
1641395 |
T |
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| Q |
202 |
tggtggcattgtagatagatattacaagatgtgaaatgattaaatcagattcattcatttaaactggcatacagcattgttcataact |
289 |
Q |
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| T |
1641396 |
tggtggcattg----tagatattacaagatgtgaaatgattaaatcagattcattcatttaaactgccatacagcattgttcataact |
1641479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 1071046 - 1070997
Alignment:
| Q |
30 |
gtagaagatattggtgcctgcccatttggttgataacctgttcagaataa |
79 |
Q |
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| T |
1071046 |
gtagaagatattggtgcttgcccatttggctgataaactgttgagaataa |
1070997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 1046247 - 1046194
Alignment:
| Q |
30 |
gtagaagatattggtgcctgcccatttggttgataacctgttcagaataatatg |
83 |
Q |
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| T |
1046247 |
gtagaagatattggtgcttgtccatttggttgataaactggttagaattatatg |
1046194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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