View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8119_low_15 (Length: 259)

Name: NF8119_low_15
Description: NF8119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8119_low_15
NF8119_low_15
[»] chr8 (3 HSPs)
chr8 (19-253)||(32579700-32579934)
chr8 (193-253)||(32581554-32581614)
chr8 (19-50)||(32581450-32581481)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 32579700 - 32579934
Alignment:
Q  19 catcacaaccctgcaacatgatcaacttcttataattatgcatttgaaaaagcttaattacttattatatgaatagttgacaaacaaaaagacccgaaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32579700 catcacaaccctgcaacatgatcaacttcttataattatgcatttgaaaaagcttaattacttattatatgaatagttgacaaacaaaaagacccgaaca 32579799  T
Q  119 ccggacacaattgacatatagacactcgttaatacaaaaaatagacatgattgaatgtatttgacaccgacatattcaatttgaagtgttgaagctatat 218  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32579800 tcggacacaactgacatatagacactcgttaatacaaaaaatagacatgattgaatgtatttgacaccgacatattcaatttgaagtgttgaagctatat 32579899  T
Q  219 acatataatgcatttttaatcaccgcaacaccaaa 253  Q
    |||||||||||||||||||||||||||||| ||||    
T  32579900 acatataatgcatttttaatcaccgcaacatcaaa 32579934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 32581554 - 32581614
Alignment:
Q  193 ttcaatttgaagtgttgaagctatatacatataatgcatttttaatcaccgcaacaccaaa 253  Q
    ||||||||||||||| || |||| |||||||||||||||||||||||||||||||| ||||    
T  32581554 ttcaatttgaagtgtcgaggctacatacatataatgcatttttaatcaccgcaacatcaaa 32581614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 32581450 - 32581481
Alignment:
Q  19 catcacaaccctgcaacatgatcaacttctta 50  Q
    ||||||||||||||||||||||||||||||||    
T  32581450 catcacaaccctgcaacatgatcaacttctta 32581481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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