View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8119_low_16 (Length: 250)
Name: NF8119_low_16
Description: NF8119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8119_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 79 - 237
Target Start/End: Original strand, 26794345 - 26794501
Alignment:
| Q |
79 |
cacttcctaactttaggtttcggagcataggataggaggcaagcatg-aaaacaatgatagcaacttcccacacgcattgccaaagatatctccggccaa |
177 |
Q |
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| T |
26794345 |
cacttcctaactttaggtttcggagcataggataggaggcaagcatggaaaacaatgatagcaacttcccacacgcattgccaaagatatctccggccaa |
26794444 |
T |
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| Q |
178 |
ctaaacacctatgcatgtaggaggttcaaagtttgatcactatactaacaagttttcttc |
237 |
Q |
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| T |
26794445 |
ctaaacacctatgcatgt---aggttcaaagtttgatcactatactaacaagttttcttc |
26794501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26794297 - 26794348
Alignment:
| Q |
1 |
gagttagagaaaatacactcatttacgaagctcctagatagcctatatcact |
52 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26794297 |
gagttagagaaaatacactcatttacgaagctcctagatagcctataccact |
26794348 |
T |
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