View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8119_low_2 (Length: 470)
Name: NF8119_low_2
Description: NF8119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8119_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 45 - 454
Target Start/End: Complemental strand, 36956548 - 36956139
Alignment:
| Q |
45 |
aatgattaacattttgatcaggtttactttcagttagtgatgccaagaaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatga |
144 |
Q |
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| T |
36956548 |
aatgaataacatcttgatcaggtttactttcagtttgtgatgccaagaaaagaaaagggtagtgagaaatgtaccgcaatggcttgctagttgatgatga |
36956449 |
T |
|
| Q |
145 |
tggaaggaaaagaagcatatatnnnnnnntcacaaccgcaacaaaaattagagccataaccagaaacacatttgccaaccaagtaagttcactaataaca |
244 |
Q |
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| T |
36956448 |
tggaaggaaaagaagcatatataaaaaaatcacaaccgcaacaaaaatcagagccataaccagaaacacatttgccaaccaattaagttcactaataaca |
36956349 |
T |
|
| Q |
245 |
gtgtagagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaagtagcggcataacgattttgagagtaaaagtcagcaattcagttaatc |
344 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| | |||||||||||||| |
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| T |
36956348 |
gtgtacagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaagaagcggcacaacaattttgagagtaaaagttaccaattcagttaatc |
36956249 |
T |
|
| Q |
345 |
caagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagatt |
444 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| | || |||||||||||||| ||||| |
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| T |
36956248 |
caagtgttgcccaaaagagtatgatggtagcactaattgaactgaacaatgatattgtgatgaagataatgaaaacatggaacattgcatgacatagatt |
36956149 |
T |
|
| Q |
445 |
gtgtgctttt |
454 |
Q |
| |
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|||||||||| |
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| T |
36956148 |
gtgtgctttt |
36956139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 58 - 454
Target Start/End: Complemental strand, 36935681 - 36935285
Alignment:
| Q |
58 |
ttgatcaggtttactttcagttagtgatgccaagaaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatgatggaaggaaaaga |
157 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |||||||| || || ||||||||||||| ||| || ||||||||||||| |||||||||||||||| |
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| T |
36935681 |
ttgatcaggtttactttcagttcgtgatgccaaaaaaagatatggataatgagaaatgtaccgcaaggggttgctagttgatggtgatggaaggaaaaga |
36935582 |
T |
|
| Q |
158 |
agcatatatnnnnnnntcacaaccgcaacaaaaattagagccataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccag |
257 |
Q |
| |
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|||| |||| ||||||| || |||||||| || |||||||||||||||||||| | ||||| | |||||||| ||||||||||||||||||| |
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| T |
36935581 |
agcacatataacaaaatcacaacggcgacaaaaatcagtgccataaccagaaacacattggacaaccgacgtagttcactgataacagtgtagagaccag |
36935482 |
T |
|
| Q |
258 |
caatgaaagcaaaagataatgaaatgagagcgattccaagtagcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgccca |
357 |
Q |
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| T |
36935481 |
ccatgaaagccaaagataatgcaataagagcgattccaagaagcggcataacgattttgagaggtaaagtcagcaattcagttaacccaaatgttgccca |
36935382 |
T |
|
| Q |
358 |
aaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgctttt |
454 |
Q |
| |
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||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| || |||||||||| |||||| ||||||||||||||| |
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| T |
36935381 |
aaagagtatgatggtagcactaatggaactgaacaatgatactgtgatgaagataatgaaagcatgaaacattgtatgacatagattgtgtgctttt |
36935285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 92 - 454
Target Start/End: Complemental strand, 36948425 - 36948063
Alignment:
| Q |
92 |
aaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatgatggaaggaaaagaagcatatatnnnnnnntcacaaccgcaacaaaaa |
191 |
Q |
| |
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|||||| | ||||||| |||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| || ||||| ||||||||| |
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| T |
36948425 |
aaaagaaaggggtagtaggaaatgtaccgcaatggtatgctagttgatgatgatggaaggaaaaggagcatatataaaagaatctcaaccacaacaaaaa |
36948326 |
T |
|
| Q |
192 |
ttagagccataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaagataatgaaatgagagcgat |
291 |
Q |
| |
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| | | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| | ||| ||||||||||| |
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| T |
36948325 |
tcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaagacagtgagatgagagcgat |
36948226 |
T |
|
| Q |
292 |
tccaagtagcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaag |
391 |
Q |
| |
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|||||| | |||||||| ||||| |||| || ||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || |
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| T |
36948225 |
tccaagaattggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaat |
36948126 |
T |
|
| Q |
392 |
aatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgctttt |
454 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||| |
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| T |
36948125 |
aatgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgctttt |
36948063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 218 - 454
Target Start/End: Original strand, 37069660 - 37069896
Alignment:
| Q |
218 |
gccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaagtagcggcataacgattttga |
317 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||| || |||| |||||||| | |
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| T |
37069660 |
gccaaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttca |
37069759 |
T |
|
| Q |
318 |
gagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaa |
417 |
Q |
| |
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| | ||||||| ||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||| || |||||||||||||||||||||||||| |
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| T |
37069760 |
gtgagaaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
37069859 |
T |
|
| Q |
418 |
tgcttgaaacattgcatgacaaagattgtgtgctttt |
454 |
Q |
| |
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||||| |||||||||||||| || |||| ||||||| |
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| T |
37069860 |
agcttggaacattgcatgacataggttgtttgctttt |
37069896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 175 - 454
Target Start/End: Original strand, 37079377 - 37079656
Alignment:
| Q |
175 |
cacaaccgcaacaaaaattagagccataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagcaatgaaagcaaaagat |
274 |
Q |
| |
|
||||||| |||| |||||| ||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| |||||| |
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|
| T |
37079377 |
cacaaccacaaccaaaattgaagctacaaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagtccagccataaaagccaaagat |
37079476 |
T |
|
| Q |
275 |
aatgaaatgagagcgattccaagtagcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaaaagagtatgatggtag |
374 |
Q |
| |
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| ||| | ||||||||||||||| || ||||| || ||||| |||| ||||||| |||||||| || |||||| ||||||||||||||||||| |||| |
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| T |
37079477 |
agtgagacgagagcgattccaagaagtggcatcacaattttcagagagaaagtcaccaattcaggtattccaagctttgcccaaaagagtatgatagtag |
37079576 |
T |
|
| Q |
375 |
cactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgctttt |
454 |
Q |
| |
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||||||||||| || ||||||||||||||||| |||||||| | || |||||||||||||| || |||| ||||||| |
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| T |
37079577 |
aactaatggaactgaacaatgatattgtgatgaatataatgaaaacatggaacattgcatgacataggttgtttgctttt |
37079656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 59 - 454
Target Start/End: Original strand, 12493290 - 12493685
Alignment:
| Q |
59 |
tgatcaggtttactttcagttagtgatgccaagaaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatgatggaaggaaaagaa |
158 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
12493290 |
tgatcatgtttactttcagttcgtgatgccaaaaaaagataaaggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaaggaaactga |
12493389 |
T |
|
| Q |
159 |
gcatatatnnnnnnntcacaaccgcaacaaaaattagagccataaccagaaacacatttgccaaccaagtaagttcactaataacagtgtagagaccagc |
258 |
Q |
| |
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|||||||| |||||||||||| |||||| | |||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||| |
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| T |
12493390 |
gcatatataacgcaatcacaaccgcaataaaaatcaatgccataaccagagacacatttgacaaccaagtaagttcactaataacagtgtaaagactagc |
12493489 |
T |
|
| Q |
259 |
aatgaaagcaaaagataatgaaatgagagcgattccaagtagcggcataacgattttgagagtaaaagtcagcaattcagttaatccaagtgttgcccaa |
358 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |||||||| || ||||||||||||||||| | |||||||||||| ||||||||||||||| |
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|
| T |
12493490 |
catgaaagccaaagataacgaaatgagagcgattccaagaagcggcatgaccattttgagagtaaaagttaccaattcagttaacccaagtgttgcccaa |
12493589 |
T |
|
| Q |
359 |
aagagtatgatggtagcactaatggaacaaaagaatgatattgtgatgaagataatgaatgcttgaaacattgcatgacaaagattgtgtgctttt |
454 |
Q |
| |
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||||||||||| |||||||||||||||| || || ||||||||||||||||||||||| || || |||||||||||||| || ||||||||||| |
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| T |
12493590 |
aagagtatgatagtagcactaatggaactgaacaacgatattgtgatgaagataatgaaagcatggaacattgcatgacataggctgtgtgctttt |
12493685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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