View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8119_low_21 (Length: 231)
Name: NF8119_low_21
Description: NF8119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8119_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 46723671 - 46723870
Alignment:
| Q |
14 |
gaagaatagacagatcaaagcaaagcaagttatatttcacaggaagaagaatctacaatactatgaaatatctgcaaagagtaactataatttcgagaaa |
113 |
Q |
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| T |
46723671 |
gaagaatagacagatcaaagcaaagcaagttatatttcacaggaagaagaatctacaatactatgaaatatctgcaaagagtaactataatttcgagaaa |
46723770 |
T |
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| Q |
114 |
cctttcttataccttgccaagaaacttgcagggtaagtaactaattgaatacactctattcattctttgatatatatgccaatgtcatgattgatgaatg |
213 |
Q |
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| T |
46723771 |
cctttcttataccttgccaagaaacttgcagggtaagtaactaattgaatatactctattcattctttgatatatatgccaatgtcatgattgatgaatg |
46723870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 49685402 - 49685287
Alignment:
| Q |
33 |
gcaaagcaagttatatttcacaggaagaagaatctacaatactatgaaatatctgcaaagagtaactataatttcgagaaacctttcttataccttgcca |
132 |
Q |
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| T |
49685402 |
gcaaagcaggttaccttccacaggaagaagaatttgcagtactatgagatttcagctaagagcaactataactttgagaagcctttcctttaccttgcca |
49685303 |
T |
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| Q |
133 |
agaaacttgcagggta |
148 |
Q |
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| T |
49685302 |
ggaaacttgcagggta |
49685287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 49690768 - 49690653
Alignment:
| Q |
33 |
gcaaagcaagttatatttcacaggaagaagaatctacaatactatgaaatatctgcaaagagtaactataatttcgagaaacctttcttataccttgcca |
132 |
Q |
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| T |
49690768 |
gcaaagcaggttaccttccacaggaagaagaatttgcagtactatgagatttcagctaagagcaactataactttgagaagcctttcctttaccttgcca |
49690669 |
T |
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| Q |
133 |
agaaacttgcagggta |
148 |
Q |
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| T |
49690668 |
ggaaacttgcagggta |
49690653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 49695598 - 49695483
Alignment:
| Q |
33 |
gcaaagcaagttatatttcacaggaagaagaatctacaatactatgaaatatctgcaaagagtaactataatttcgagaaacctttcttataccttgcca |
132 |
Q |
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| T |
49695598 |
gcaaagcaggttaccttccacagaaaaaagaatttgcagtactatgagatttcagctaagagcaactataactttgagaagcctttcttgtacctagcca |
49695499 |
T |
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| Q |
133 |
agaaacttgcagggta |
148 |
Q |
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| T |
49695498 |
ggaaacttgcagggta |
49695483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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