View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8119_low_22 (Length: 230)

Name: NF8119_low_22
Description: NF8119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8119_low_22
NF8119_low_22
[»] chr3 (18 HSPs)
chr3 (13-230)||(2748459-2748676)
chr3 (17-230)||(2856270-2856483)
chr3 (20-230)||(2839060-2839270)
chr3 (17-230)||(2768536-2768747)
chr3 (18-230)||(2789824-2790036)
chr3 (23-230)||(2806732-2806939)
chr3 (17-230)||(2796826-2797039)
chr3 (30-226)||(2818035-2818231)
chr3 (17-226)||(5412374-5412581)
chr3 (29-226)||(2758691-2758888)
chr3 (131-201)||(3200526-3200596)
chr3 (131-201)||(3357852-3357922)
chr3 (132-183)||(3311128-3311179)
chr3 (132-183)||(3322727-3322778)
chr3 (138-193)||(22104280-22104335)
chr3 (135-192)||(3304440-3304497)
chr3 (117-193)||(22621774-22621850)
chr3 (126-178)||(30990147-30990199)
[»] scaffold0691 (1 HSPs)
scaffold0691 (35-230)||(6612-6807)
[»] chr1 (2 HSPs)
chr1 (112-207)||(34975042-34975137)
chr1 (135-201)||(41947701-41947767)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 2748459 - 2748676
Alignment:
Q  13 tagaaatatgagatgagagtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2748459 tagaaatatgagatgagagtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaag 2748558  T
Q  113 tgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2748559 tgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaac 2748658  T
Q  213 gatggaataagaacttgg 230  Q
    ||||||||||||||||||    
T  2748659 gatggaataagaacttgg 2748676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 2856483 - 2856270
Alignment:
Q  17 aatatgagatgagagtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgta 116  Q
    ||||||| |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  2856483 aatatgatatgagagttaaatggcagaaactgcagtattgtttgccctgggggaagtgttccagttcctaaaagaagaaacaaatcttttgagaggtgta 2856384  T
Q  117 cacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  || ||||    
T  2856383 cacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacataagggctgcggatgaagcagacatcaatgatg 2856284  T
Q  217 gaataagaacttgg 230  Q
    ||||||||||||||    
T  2856283 gaataagaacttgg 2856270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 2839270 - 2839060
Alignment:
Q  20 atgagatgagagtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacac 119  Q
    |||| |||||||| |||||||||| |||||||||| ||||| ||| |||||||||||| | |||||||||||||||||||||||||||||| ||||||||    
T  2839270 atgatatgagagttaaatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcctaaaagaagaaacaaatcttctgagaggtgtacac 2839171  T
Q  120 agagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatggaa 219  Q
    |||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  2839170 agagatttttcagatatcaaagatgaacttgagatcattctagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacatcaacgatggaa 2839071  T
Q  220 taagaacttgg 230  Q
    |||||||||||    
T  2839070 taagaacttgg 2839060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 2768536 - 2768747
Alignment:
Q  17 aatatgagatgagagtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgta 116  Q
    |||||||||||||  | |||||||||||||||| ||||  ||||  || ||| |||| ||||| ||||||||||||||||||||||| |||||  |||||    
T  2768536 aatatgagatgag--taaaatggcagaaactgctgtattatttgctcttgggcaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgta 2768633  T
Q  117 cacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2768634 cacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacaccaacgatg 2768733  T
Q  217 gaataagaacttgg 230  Q
    ||||||||||||||    
T  2768734 gaataagaacttgg 2768747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 2789824 - 2790036
Alignment:
Q  18 atatgagatgagagtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtac 117  Q
    ||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||  | ||||||||||||||||||||||| |||||  |||| |    
T  2789824 atatgagatgagactgaaatggcagaaactgcagtattatttgtcctgggggaagtgttggaattcctaaaagaagaaacaaatctcctgagtggtgtgc 2789923  T
Q  118 acagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatgg 217  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||| || |||||    
T  2789924 acaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagacaccaatgatgg 2790023  T
Q  218 aataagaacttgg 230  Q
    |||||||||||||    
T  2790024 aataagaacttgg 2790036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 2806732 - 2806939
Alignment:
Q  23 agatgagagtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacaga 122  Q
    ||||||||||||||||||||||||||||||||  |||| ||| |  ||||||||||  |||||||||||||||||||||||||| | | ||||||||| |    
T  2806732 agatgagagtgaaatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctaaaaggtgtacacaca 2806831  T
Q  123 gatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatggaataa 222  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||| || |||||||| |    
T  2806832 gaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaagcagacacaaatgatggaatta 2806931  T
Q  223 gaacttgg 230  Q
    ||||||||    
T  2806932 gaacttgg 2806939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 2796826 - 2797039
Alignment:
Q  17 aatatgagatgagagtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgta 116  Q
    ||||||||||||||||||||||||||||||| ||||||  |||| ||||||| |||||||  | ||||||||||||||||||||||| |||||  ||||     
T  2796826 aatatgagatgagagtgaaatggcagaaacttcagtattatttgccctggggaaagtgtttgaattcctaaaagaagaaacaaatctgctgagtcgtgtg 2796925  T
Q  117 cacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatg 216  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||| ||||| |||||| | ||||| || ||||    
T  2796926 cacaaagatttttcagacatcacagatgaacttgagagcattcaagttttcctcaaagatgcagatacaagagctgcagatgaaaccgacaccaatgatg 2797025  T
Q  217 gaataagaacttgg 230  Q
    ||||||||||||||    
T  2797026 gaataagaacttgg 2797039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 2818035 - 2818231
Alignment:
Q  30 agtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagattttt 129  Q
    |||||||||||||||||||||||||| |  | | ||  ||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  2818035 agtgaaatggcagaaactgcagtatcatcagccttgtcggaagtgtttcagttcctaaaagaagaaacaaagcttctgagaggtgtacacagagattttt 2818134  T
Q  130 cagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatggaataagaac 226  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||| || |||||||| ||| | || ||||||||||||||    
T  2818135 cagacatcaaagatgaactagaaagcatccaagtcttcctcaaagatgcagatagaagggcagcagatgaagcggacgccaatgatggaataagaac 2818231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 5412374 - 5412581
Alignment:
Q  17 aatatgagatgagagtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgta 116  Q
    |||||||| | ||||| ||||||||||||||||||||| ||||| ||| ||| || ||||||| |||||| |||||||||||||||  |||| | || ||    
T  5412374 aatatgagctaagagttaaatggcagaaactgcagtattgtttgcccttgggaaactgttccaattcctagaagaagaaacaaatcggctgaaaggtata 5412473  T
Q  117 cacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatg 216  Q
    ||||||  |||||||||||||||||||||||| || | |||||||  |||||||||||||||||||| ||||||||| |||||||| ||| | || ||||    
T  5412474 cacaga--tttttcagacatcaaagatgaactagaaatcattcaatccttcctcaaagatgcagacaaaagggctgcagatgaagcggacgccaatgatg 5412571  T
Q  217 gaataagaac 226  Q
    ||||||||||    
T  5412572 gaataagaac 5412581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 2758691 - 2758888
Alignment:
Q  29 gagtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttt 128  Q
    |||||||||||||||||||||||||   |  | | |||| |||||||||||  | || || | | ||||||||||||| ||| ||||||||| ||||||     
T  2758691 gagtgaaatggcagaaactgcagtaatatcagccttgggagaagtgttccaacttcttaaggtaaaaacaaatcttctaagaggtgtacacaaagatttc 2758790  T
Q  129 tcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatggaataagaac 226  Q
    | ||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || ||||||||||| || || || |||||||||||    
T  2758791 ttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaagcagaaaccaatgaaggaataagaac 2758888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 3200526 - 3200596
Alignment:
Q  131 agacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaag 201  Q
    |||||||||| |||||||||||||||||||||| |  ||||| |||||||||| || |||||| |||||||    
T  3200526 agacatcaaatatgaacttgagagcattcaagtttcactcaaggatgcagacacaaaggctgctgatgaag 3200596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 3357922 - 3357852
Alignment:
Q  131 agacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaag 201  Q
    ||||||||||||||||||||||| ||| ||| |||  ||||| |||||||||| ||||||||| |||||||    
T  3357922 agacatcaaagatgaacttgagatcatccaattctcactcaaggatgcagacacaagggctgctgatgaag 3357852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 3311179 - 3311128
Alignment:
Q  132 gacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagaca 183  Q
    |||||||||||||| ||||||||||| |||| ||||||||| ||||| ||||    
T  3311179 gacatcaaagatgaccttgagagcatccaagccttcctcaaggatgctgaca 3311128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 3322778 - 3322727
Alignment:
Q  132 gacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagaca 183  Q
    |||||||||||||| ||||||||||| |||| ||||||||| ||||| ||||    
T  3322778 gacatcaaagatgaccttgagagcatccaagccttcctcaaggatgctgaca 3322727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 22104280 - 22104335
Alignment:
Q  138 aaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgc 193  Q
    |||||||||||||| ||||| |||| ||||||||||||||| || ||||| |||||    
T  22104280 aaagatgaacttgaaagcatccaagccttcctcaaagatgctgatagaagagctgc 22104335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 3304497 - 3304440
Alignment:
Q  135 atcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctg 192  Q
    ||||||||||| ||||||||||| |||  ||||||||| ||||| ||||||| |||||    
T  3304497 atcaaagatgatcttgagagcatccaatccttcctcaaggatgctgacagaaaggctg 3304440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 22621850 - 22621774
Alignment:
Q  117 cacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgc 193  Q
    |||| ||| ||| ||||||| |||||||||||||| ||||| |||| |||||| || ||||| || ||||| |||||    
T  22621850 cacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgc 22621774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 30990199 - 30990147
Alignment:
Q  126 ttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgc 178  Q
    |||||||| || |||||||||||||| |||||||||| ||| || ||||||||    
T  30990199 ttttcagatattaaagatgaacttgaaagcattcaagcctttcttaaagatgc 30990147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 35 - 230
Target Start/End: Complemental strand, 6807 - 6612
Alignment:
Q  35 aatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttttcagac 134  Q
    |||||||||||||||||||| ||||| ||| || ||| ||||||| ||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||    
T  6807 aatggcagaaactgcagtattgtttgccctcggagaattgttccaattcctaaaaaaagaaacaaatcttctgagaggtgtacacacagattttacagac 6708  T
Q  135 atcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatggaataagaacttgg 230  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  6707 atcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagacagaaaggctgcagatgaagcagacactaatgatggaataagaacttgg 6612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 34975042 - 34975137
Alignment:
Q  112 gtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagaca 207  Q
    |||| |||| ||| ||| ||||||| ||| ||||||| || |||||||||| ||||||||||||| | || ||||| ||||| | ||||| |||||    
T  34975042 gtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagattctgatagaagagctgcagctgaaggagaca 34975137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 41947767 - 41947701
Alignment:
Q  135 atcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaag 201  Q
    |||||| ||||||||||||||||  ||| ||| ||||| |||||||||| ||||||||  |||||||    
T  41947767 atcaaacatgaacttgagagcatcaaagcctttctcaaggatgcagacacaagggctgttgatgaag 41947701  T

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