View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8119_low_23 (Length: 227)

Name: NF8119_low_23
Description: NF8119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8119_low_23
NF8119_low_23
[»] chr5 (8 HSPs)
chr5 (17-208)||(33083454-33083645)
chr5 (141-208)||(33063964-33064031)
chr5 (141-208)||(33065050-33065117)
chr5 (141-208)||(33067210-33067277)
chr5 (141-208)||(33069348-33069415)
chr5 (141-208)||(33062869-33062936)
chr5 (141-208)||(33066124-33066191)
chr5 (141-208)||(33068262-33068329)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 33083645 - 33083454
Alignment:
Q  17 tcgtgtttgttactttgttgttgtgctgctttttgggtccttaactcgattaggctaagtggtcatgaacattttggatactgttttggaaagtgaccat 116  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33083645 tcgtgtttgttactttgttgttttgctgttttttgggtccttaactcaattaggctaagtggtcatgaacattttggatactgttttggaaagtgaccat 33083546  T
Q  117 ttagatgtgtggagtagtaattgattaaaggttgtttttagatacatgttttcgaaaaacatatgtgttgagtgtgcactttcagacaattt 208  Q
    ||||||||||||||| |||||||||||||||||||| ||| ||||||||||| | |||||||||| |||||||||||||||||| |||||||    
T  33083545 ttagatgtgtggagtcgtaattgattaaaggttgttcttaaatacatgtttttgtaaaacatatgggttgagtgtgcactttcaaacaattt 33083454  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 33064031 - 33063964
Alignment:
Q  141 ttaaaggttgtttttagatacatgttttcgaaaaacatatgtgttgagtgtgcactttcagacaattt 208  Q
    |||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  33064031 ttaaaggttgttcttagatacatgtttttgaaaaacatatgggttgagtgtgcactttcagacaattt 33063964  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 33065117 - 33065050
Alignment:
Q  141 ttaaaggttgtttttagatacatgttttcgaaaaacatatgtgttgagtgtgcactttcagacaattt 208  Q
    |||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  33065117 ttaaaggttgttcttagatacatgtttttgaaaaacatatgggttgagtgtgcactttcagacaattt 33065050  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 33067277 - 33067210
Alignment:
Q  141 ttaaaggttgtttttagatacatgttttcgaaaaacatatgtgttgagtgtgcactttcagacaattt 208  Q
    |||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  33067277 ttaaaggttgttcttagatacatgtttttgaaaaacatatgggttgagtgtgcactttcagacaattt 33067210  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 33069415 - 33069348
Alignment:
Q  141 ttaaaggttgtttttagatacatgttttcgaaaaacatatgtgttgagtgtgcactttcagacaattt 208  Q
    |||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  33069415 ttaaaggttgttcttagatacatgtttttgaaaaacatatgggttgagtgtgcactttcagacaattt 33069348  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 33062936 - 33062869
Alignment:
Q  141 ttaaaggttgtttttagatacatgttttcgaaaaacatatgtgttgagtgtgcactttcagacaattt 208  Q
    |||||| ||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  33062936 ttaaagattgttcttagatacatgtttttgaaaaacatatgggttgagtgtgcactttcagacaattt 33062869  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 33066191 - 33066124
Alignment:
Q  141 ttaaaggttgtttttagatacatgttttcgaaaaacatatgtgttgagtgtgcactttcagacaattt 208  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||    
T  33066191 ttaaaggttgttcttagatacatgtttttgaaaaacatatgggttgagtgtgcactttcaaacaattt 33066124  T

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Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 33068329 - 33068262
Alignment:
Q  141 ttaaaggttgtttttagatacatgttttcgaaaaacatatgtgttgagtgtgcactttcagacaattt 208  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||    
T  33068329 ttaaaggttgttcttagatacatgtttttgaaaaacatatgggttgagtgtgcactttcaaacaattt 33068262  T

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