View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8119_low_3 (Length: 430)
Name: NF8119_low_3
Description: NF8119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8119_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Complemental strand, 7723815 - 7723414
Alignment:
| Q |
9 |
tggtggtggtggttatacatcgaagctgactccattacgccaatagatggcgctgtcgctgtgccggcggcagaagttgctcttctctcttccttcttga |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7723815 |
tggtggtggtggttatacatcgaagctgactccattacgccaatagatggcgctgtcgctgtgccagcggcagaagttgctcttctctcttccttcttga |
7723716 |
T |
|
| Q |
109 |
atctgatcccacatgcattgcatagtgactgtaattcccattcaaattgaaactatcaaaagattgaaataaagttatatatttggaatgtatatattta |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || | |||||||| |
|
|
| T |
7723715 |
atctgatcccacatgcattgcataatgactgtaattcc-attcaaattgaaactatcaaaagattgaaataaagttatatata-gttatat-tatattta |
7723619 |
T |
|
| Q |
209 |
gagtannnnnnn-acctttgggcctcgagggccgttcctccaaagcggtgtggaggtggtgtcacagtttgcacatctacgagcaagaagagaatcattg |
307 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7723618 |
gagtattttttttacctttgggcctcgagggccgttcctccaaagcggtgtggaggtggtgtcacagtttgcacatctacgagcaagaagagaatcattg |
7723519 |
T |
|
| Q |
308 |
ttgttattattggtacttgcacgtgttgcctttgtttgagactgagtactgttgtactgtttaggtgttaacaaatcccaacagaaatttttgacagaac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7723518 |
ttgttattattggtacttgcacgtgttgcctttgtttgagactgagtactgttgtactgtttaggtgttaacaaatcccaacagaaatttttgacagaac |
7723419 |
T |
|
| Q |
408 |
gacgt |
412 |
Q |
| |
|
||||| |
|
|
| T |
7723418 |
gacgt |
7723414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 32956020 - 32956086
Alignment:
| Q |
87 |
gctcttctctcttccttcttgaatctgatcccacatgcattgcatagtgactgtaattcccattcaa |
153 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||| | |||||| |
|
|
| T |
32956020 |
gctcttctctcttccttcttgtatctaatcccacaagcattgcatagtgactgcaatttcaattcaa |
32956086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 32956322 - 32956410
Alignment:
| Q |
221 |
acctttgggcctcgagggccgttcctccaaagcggtgtggaggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgtt |
309 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||| ||||| || |||| ||||||| | ||||| | |||||||||||||||||||||||| |
|
|
| T |
32956322 |
accttagggccacgaggaccattcctccaaaggggtgtagaagtggagtcacagctagcacaacgacgagcaagaagagaatcattgtt |
32956410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University