View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8119_low_4 (Length: 428)

Name: NF8119_low_4
Description: NF8119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8119_low_4
NF8119_low_4
[»] chr7 (18 HSPs)
chr7 (14-267)||(2337249-2337502)
chr7 (17-267)||(2329350-2329600)
chr7 (268-414)||(2335949-2336095)
chr7 (17-254)||(1088326-1088560)
chr7 (17-260)||(1550954-1551203)
chr7 (17-145)||(1557664-1557792)
chr7 (17-258)||(2320864-2321102)
chr7 (17-259)||(1595727-1595966)
chr7 (17-259)||(3955712-3955951)
chr7 (17-145)||(1105781-1105909)
chr7 (17-145)||(1541720-1541848)
chr7 (17-145)||(1604168-1604296)
chr7 (268-414)||(2319586-2319732)
chr7 (20-146)||(9532308-9532433)
chr7 (275-414)||(1087053-1087195)
chr7 (275-414)||(1594552-1594694)
chr7 (48-107)||(30792125-30792184)
chr7 (348-414)||(2327808-2327874)
[»] scaffold0491 (4 HSPs)
scaffold0491 (17-145)||(1370-1498)
scaffold0491 (17-145)||(6257-6385)
scaffold0491 (268-414)||(7777-7923)
scaffold0491 (347-414)||(3232-3299)
[»] chr8 (8 HSPs)
chr8 (17-145)||(18739491-18739619)
chr8 (17-145)||(18744455-18744583)
chr8 (17-145)||(18723764-18723892)
chr8 (17-142)||(18749416-18749541)
chr8 (268-414)||(18751401-18751550)
chr8 (347-414)||(18741426-18741493)
chr8 (347-414)||(18746390-18746457)
chr8 (347-412)||(18755597-18755662)
[»] chr4 (4 HSPs)
chr4 (20-146)||(16880077-16880203)
chr4 (20-146)||(54122708-54122829)
chr4 (20-146)||(48712632-48712753)
chr4 (20-146)||(42977974-42978095)
[»] chr1 (2 HSPs)
chr1 (20-146)||(19250188-19250314)
chr1 (20-89)||(41669048-41669112)
[»] chr6 (1 HSPs)
chr6 (20-146)||(1257601-1257722)
[»] chr5 (3 HSPs)
chr5 (20-146)||(8873295-8873416)
chr5 (22-146)||(39102489-39102607)
chr5 (22-146)||(36620399-36620517)
[»] chr3 (2 HSPs)
chr3 (20-146)||(31657807-31657928)
chr3 (48-88)||(29748679-29748719)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 2337502 - 2337249
Alignment:
Q  14 ttataaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2337502 ttataaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcaaaat 2337403  T
Q  114 tccatatacaaaacaaatccccattctttgttgatgttgttgtatttggaagcttgttcttaatagaattttgacgaagtttcaagaatattagaagtga 213  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||| ||||||||||||||||||| ||| |||||||||||||    
T  2337402 tccatatacaaaacaaatccccattctttgttgatattgttgtgtttgcaagcttgatcttagtagaattttgacgaagtttgaagcatattagaagtga 2337303  T
Q  214 gaaggctaagatcagaatcaaaaggatagaaagaacaatgacaacatcatagtt 267  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2337302 gaaggctaagatcagaatcaaaaggataggaagaacaatgacaacatcatagtt 2337249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 2329600 - 2329350
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  2329600 taaacacttccatatgctcctgttccaatacaatatctaatgtcaaagtcttctgttgctttaatgatgtcatcgtgtgctatttttccatcaaaattcc 2329501  T
Q  117 atatacaaaacaaatccccattctttgttgatgttgttgtatttggaagcttgttcttaatagaattttgacgaagtttcaagaatattagaagtgagaa 216  Q
    |||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  2329500 atatacaaaacaaatccccattctttgttgatattgttgtgtttgcaagcttgatcttagtagaattttgacgaagtttgaagcatattagaagtgagaa 2329401  T
Q  217 ggctaagatcagaatcaaaaggatagaaagaacaatgacaacatcatagtt 267  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2329400 ggctaagatcagaatcaaaaggataggaagaacaatgacaacatcatagtt 2329350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 268 - 414
Target Start/End: Complemental strand, 2336095 - 2335949
Alignment:
Q  268 actattcattatagcatttgcgttcatttgaagttgagatttcattgtggcagattaagtacctacaatgaaaatccagataagaagaaagaccatcctc 367  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2336095 actattcattatagcatttgcttccatttgaagttgagatttcattgtggcagattgagtacctacaatgaaaatccagataagaagaaagaccatcctc 2335996  T
Q  368 atttttggaccataggaattggaaactaaatattttgtcaagttcat 414  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  2335995 atttttggaccataggaattggaaactaaatattttgttaagttcat 2335949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 1088560 - 1088326
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    |||||||||| |||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||  |||||||||||| ||||||||||    
T  1088560 taaacacttctatatgctcctgttccaatgcaatatctcatgtcaaagtcctctgttgctttaataatgtcatcgaatgctatttttccgtcataattcc 1088461  T
Q  117 atatacaaaacaaatccccattctttgttgatgttgttgtatttggaagcttgttcttaatagaattttgacgaagtttcaagaatattagaagtgagaa 216  Q
    ||| |||||||| |||  ||||||||||||   | ||||| |||  | |||||||||||| |||| | ||||||||||| ||| |||| |||| ||| ||    
T  1088460 atacacaaaacatatctacattctttgttg---tcgttgtgttttcatgcttgttcttaacagaactatgacgaagtttgaagcatatgagaaatgataa 1088364  T
Q  217 ggctaagatcagaatcaaaaggatagaaagaacaatga 254  Q
    ||||||||| | |||   |||||| |||||||||||||    
T  1088363 ggctaagattataatactaaggattgaaagaacaatga 1088326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 1550954 - 1551203
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||   |||||||||||| ||||| ||||    
T  1550954 taaacacttccatatgctccggttccaatgcaatatctcatgtcaaagtcttctgttgctttaataatgtcatcaaatgctatttttccgtcatagttcc 1551053  T
Q  117 atatacaaaacaaatccccat------tctttgttgatgttgttgtatttggaagcttgttcttaatagaattttgacgaagtttcaagaatattagaag 210  Q
    ||| |||||||||||||||||      |  |||||| |||||||||  ||| | |||||||||||| |||  | ||||||| ||| ||| |||| | |||    
T  1551054 atacacaaaacaaatccccatttgttgttgttgttgttgttgttgttattgcatgcttgttcttaacagaggtatgacgaaatttgaagcatatgataag 1551153  T
Q  211 tgagaaggctaagatcagaatcaaaaggatagaaagaacaatgacaacat 260  Q
    ||| ||||||||||| ||||| | |||||||| |||| |||||| |||||    
T  1551154 tgataaggctaagattagaataataaggataggaagagcaatgaaaacat 1551203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 1557664 - 1557792
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||| | ||||||||| |||||||||||||    
T  1557664 taaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatgtcatcatatgctattttcccatcataattcc 1557763  T
Q  117 atatacaaaacaaatccccattctttgtt 145  Q
    |||||||||||| ||| ||||||||||||    
T  1557764 atatacaaaacatatctccattctttgtt 1557792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 2321102 - 2320864
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| |||| |||||||| | |||||||| |||||| |||||||    
T  2321102 taaacacttccatatgctcctgttccaatgcaatatctaatgtcaaaatcttccgttgctctaatgatgtcatcatatgctatttgtccatcgtaattcc 2321003  T
Q  117 atatacaaaacaaatccccattctttgttgatgttgttgtatttggaagcttgttcttaatagaattttgacgaagtttcaagaatattagaagtgagaa 216  Q
    ||||| |||| ||||||||||||||| |   ||||| | ||| ||   |||||||||| |||||||| |||  |||||||||| | || | |||||||||    
T  2321002 atatagaaaagaaatccccattcttttt---tgttgatttatctgcttgcttgttcttgatagaattatgattaagtttcaagcagatgataagtgagaa 2320906  T
Q  217 ggctaagatcagaatcaaaaggatagaaagaacaatgacaac 258  Q
    || |||||| ||||| |  || |||| |||||||||| ||||    
T  2320905 ggttaagattagaataatgagtataggaagaacaatggcaac 2320864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 1595966 - 1595727
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| || |||||||| | |||||| || |||||||||||||    
T  1595966 taaacacttccatatgctcccgttccaatgcaatatctcatgtcaaagtcttctgttgctttgattatgtcatcatatgctatcttcccatcataattcc 1595867  T
Q  117 atatacaaaacaaatccccattctttgttgatgttgttgtatttggaagcttgttcttaatagaattttgacgaagtttcaagaatattagaagtgagaa 216  Q
    |||||||||||| ||| |||||||||||   | ||||| | |||  | ||   || ||| ||||||| ||| || |||||||| |||| |||||||||||    
T  1595866 atatacaaaacatatctccattctttgt---ttttgttatgtttccatgcaacttattagtagaattatgatgatgtttcaagtatatgagaagtgagaa 1595770  T
Q  217 ggctaagatcagaatcaaaaggatagaaagaacaatgacaaca 259  Q
    | ||| ||  ||||| | |||||| | ||||||||||||||||    
T  1595769 gactaggactagaataataaggatcggaagaacaatgacaaca 1595727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 3955712 - 3955951
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    ||||||||||||||||||||| | |||||||||||| ||||||||||||||| ||||||| |||| ||||||| || ||||||||| |||||||||||||    
T  3955712 taaacacttccatatgctccttttccaatgcaatatttaatgtcaaagtcttttgttgctctaatgatgtcattgtatgctattttgccatcataattcc 3955811  T
Q  117 atatacaaaacaaatccccattctttgttgatgttgttgtatttggaagcttgttcttaatagaattttgacgaagtttcaagaatattagaagtgagaa 216  Q
    |||||||||| ||||| ||||| || ||   |||    || |||  | |||||||||| |||||||| |||||| |||| ||| | |  |||||||||||    
T  3955812 atatacaaaataaatcaccattattcgt---tgtctccgtgtttccatgcttgttcttgatagaattatgacgacgtttgaagtacacgagaagtgagaa 3955908  T
Q  217 ggctaagatcagaatcaaaaggatagaaagaacaatgacaaca 259  Q
    ||||| ||| |||||  ||||||||| ||||||||||| ||||    
T  3955909 ggctatgattagaatagaaaggataggaagaacaatgaaaaca 3955951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 1105909 - 1105781
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    |||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||| || |||||||| | |||||| || |||||||||||||    
T  1105909 taaacacttccatatgctccagttccaatgcaatatctcatgtcaaagtcttccgttgctttgattatgtcatcatatgctatcttcccatcataattcc 1105810  T
Q  117 atatacaaaacaaatccccattctttgtt 145  Q
    |||||||||||| ||| ||||||||||||    
T  1105809 atatacaaaacatatctccattctttgtt 1105781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 1541720 - 1541848
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    |||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||| || |||||||| | |||||| || |||||||||||||    
T  1541720 taaacacttccatatgctccggttccaatgcaatatctcatgtcgaagtcttctgttgctttgatgatgtcatcatatgctatcttcccatcataattcc 1541819  T
Q  117 atatacaaaacaaatccccattctttgtt 145  Q
    |||||||||||| ||| ||||||||||||    
T  1541820 atatacaaaacatatctccattctttgtt 1541848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 1604296 - 1604168
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    ||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||| |||  |||||||| | |||||| || |||||||||||||    
T  1604296 taaacacttccatatgctcctgttccaatgcaatatctcatgtcgaagtcttccgttgctctaacgatgtcatcatatgctatcttcccatcataattcc 1604197  T
Q  117 atatacaaaacaaatccccattctttgtt 145  Q
    |||||||||||| ||| ||||||||||||    
T  1604196 atatacaaaacatatctccattctttgtt 1604168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 268 - 414
Target Start/End: Complemental strand, 2319732 - 2319586
Alignment:
Q  268 actattcattatagcatttgcgttcatttgaagttgagatttcattgtggcagattaagtacctacaatgaaaatccagataagaagaaagaccatcctc 367  Q
    |||||| | ||| |||||||| | ||| ||| |||||||| ||| || |||||||| |||||| |||||||||  ||| ||||||||||||||||||| |    
T  2319732 actatttaatatcgcatttgcttccatatgaggttgagatgtcactgaggcagattgagtacccacaatgaaaggccaaataagaagaaagaccatccac 2319633  T
Q  368 atttttggaccataggaattggaaactaaatattttgtcaagttcat 414  Q
    |||||  |||||||| ||||||||||||| |||||| ||||||||||    
T  2319632 attttctgaccatagaaattggaaactaagtattttatcaagttcat 2319586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 9532308 - 9532433
Alignment:
Q  20 acacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccata 119  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| || | |||||||||||||||||   | ||||| ||| ||||||||||| ||||    
T  9532308 acacttccatatgctcctgtccatatgcaatatctaatgtcaaagtgttgtattgctttaataatgtcaaaatatgcta-tttcccatcataatttcata 9532406  T
Q  120 tacaaaacaaatccccattctttgttg 146  Q
    | |||||||||| |  |||||||||||    
T  9532407 tgcaaaacaaattctaattctttgttg 9532433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 414
Target Start/End: Complemental strand, 1087195 - 1087053
Alignment:
Q  275 attatagcatttgcgttcatttgaagttgagatttcattgtggcag---attaagtacctacaatgaaaatccagataagaagaaagaccatcctcattt 371  Q
    |||||||||||||| | |||||||||||||||| |||| |||||||   ||| ||| || ||||| ||| | || |||| ||||||| | |||| |||||    
T  1087195 attatagcatttgcttccatttgaagttgagatgtcatagtggcagcagattgagttcccacaatcaaactgcaaataataagaaaggcaatccacattt 1087096  T
Q  372 ttggaccataggaattggaaactaaatattttgtcaagttcat 414  Q
    ||||| || || |||| |||||||||||||||||  |||||||    
T  1087095 ttggatcaaagaaatttgaaactaaatattttgtgtagttcat 1087053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 414
Target Start/End: Complemental strand, 1594694 - 1594552
Alignment:
Q  275 attatagcatttgcgttcatttgaagtt---gagatttcattgtggcagattaagtacctacaatgaaaatccagataagaagaaagaccatcctcattt 371  Q
    ||||| |||||||| | |||||||||||   ||||| || || ||||||||| ||| || ||| | | | | || |||||||||||| | ||| ||||||    
T  1594694 attattgcatttgcttccatttgaagtttatgagatgtcgttttggcagattgagttcccacagtcagactgcaaataagaagaaaggcaatcatcattt 1594595  T
Q  372 ttggaccataggaattggaaactaaatattttgtcaagttcat 414  Q
    |||||||| ||||||| |||| |||||||||| ||||||||||    
T  1594594 ttggaccaaaggaatttgaaattaaatattttctcaagttcat 1594552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 30792184 - 30792125
Alignment:
Q  48 aatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccat 107  Q
    |||||||||||||||||| || ||||||||||||||||||| | | ||||||||||||||    
T  30792184 aatatctaatgtcaaagtgttatgttgctttaataatgtcaacatatgctatttttccat 30792125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 414
Target Start/End: Complemental strand, 2327874 - 2327808
Alignment:
Q  348 taagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttcat 414  Q
    ||||||||||||||| || ||||||||||  || | |||| | || |||||||||||||||||||||    
T  2327874 taagaagaaagaccacccacatttttggaatattgaaattaggaaataaatattttgtcaagttcat 2327808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 1370 - 1498
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||| | |||||| || |||||| ||||||    
T  1370 taaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatgtcatcatatgctatcttcccatcaaaattcc 1469  T
Q  117 atatacaaaacaaatccccattctttgtt 145  Q
    |||||||||||| ||| ||||||||||||    
T  1470 atatacaaaacatatctccattctttgtt 1498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 6257 - 6385
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| || |||||||| | ||||||  |||||||||||||||    
T  6257 taaacacttccatatgctcctgttccaatacaatatctcatgtcaaagtcttctgtcgctttgattatgtcatcatatgctatcattccatcataattcc 6356  T
Q  117 atatacaaaacaaatccccattctttgtt 145  Q
    |||||||||||| ||| ||||||||||||    
T  6357 atatacaaaacatatctccattctttgtt 6385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 268 - 414
Target Start/End: Original strand, 7777 - 7923
Alignment:
Q  268 actattcattatagcatttgcgttcatttgaagttgagatttcattgtggcagattaagtacctacaatgaaaatccagataagaagaaagaccatcctc 367  Q
    |||||| | |||||||||||| | |||||||||||||||| ||||||||||||||| ||| ||  |||  |||   || ||||||||||||||||||| |    
T  7777 actatttaatatagcatttgcttccatttgaagttgagatgtcattgtggcagattgagttccctcaaccaaaccgcaaataagaagaaagaccatccac 7876  T
Q  368 atttttggaccataggaattggaaactaaatattttgtcaagttcat 414  Q
    |||||||||||| || |||| |||| |||||||||| ||||| ||||    
T  7877 atttttggaccaaagaaatttgaaattaaatattttttcaagctcat 7923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 347 - 414
Target Start/End: Original strand, 3232 - 3299
Alignment:
Q  347 ataagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttcat 414  Q
    ||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||| ||||||||||    
T  3232 ataagaagaaagaccatccacatttttggaccaaagaaatttgaaactaaatattttatcaagttcat 3299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 18739491 - 18739619
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||| | |||||| || |||||| ||||||    
T  18739491 taaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatgtcatcatatgctatcttcccatcaaaattcc 18739590  T
Q  117 atatacaaaacaaatccccattctttgtt 145  Q
    |||||||||||| ||| ||||||||||||    
T  18739591 atatacaaaacatatctccattctttgtt 18739619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 18744455 - 18744583
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||| | |||||| || |||||| ||||||    
T  18744455 taaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctttgatgatgtcatcatatgctatcttcccatcaaaattcc 18744554  T
Q  117 atatacaaaacaaatccccattctttgtt 145  Q
    |||||||||||| ||| ||||||||||||    
T  18744555 atatacaaaacatatctccattctttgtt 18744583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 18723764 - 18723892
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| || |||||||| | ||||||  |||||||||||||||    
T  18723764 taaacacttccatatgctcctgttccaatacaatatctcatgtcaaagtcttctgtcgctttgattatgtcatcatatgctatcattccatcataattcc 18723863  T
Q  117 atatacaaaacaaatccccattctttgtt 145  Q
    |||||||||||| ||| ||||||||||||    
T  18723864 atatacaaaacatatctccattctttgtt 18723892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 18749416 - 18749541
Alignment:
Q  17 taaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattcc 116  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| || |||||||| | ||||||  |||||||||||||||    
T  18749416 taaacacttccatatgctcctgttccaatacaatatctcatgtcaaagtcttctgtcgctttgattatgtcatcatatgctatcattccatcataattcc 18749515  T
Q  117 atatacaaaacaaatccccattcttt 142  Q
    |||||||||||| ||| |||||||||    
T  18749516 atatacaaaacatatctccattcttt 18749541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 268 - 414
Target Start/End: Original strand, 18751401 - 18751550
Alignment:
Q  268 actattcattatagcatttgcgttcatttgaagttga---gatttcattgtggcagattaagtacctacaatgaaaatccagataagaagaaagaccatc 364  Q
    |||||| | |||||||||||| | |||||||||||||   ||| ||||||||||||||| ||| ||  |||  |||   || ||||||||||||||||||    
T  18751401 actatttaatatagcatttgcttccatttgaagttgatgagatgtcattgtggcagattgagttccctcaaccaaaccgcaaataagaagaaagaccatc 18751500  T
Q  365 ctcatttttggaccataggaattggaaactaaatattttgtcaagttcat 414  Q
    | ||||||||||||| || |||| ||||||||||||||| ||||||||||    
T  18751501 cacatttttggaccaaagaaatttgaaactaaatattttatcaagttcat 18751550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 347 - 414
Target Start/End: Original strand, 18741426 - 18741493
Alignment:
Q  347 ataagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttcat 414  Q
    ||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||| ||||||||||    
T  18741426 ataagaagaaagaccatccacatttttggaccaaagaaatttgaaactaaatattttatcaagttcat 18741493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 347 - 414
Target Start/End: Original strand, 18746390 - 18746457
Alignment:
Q  347 ataagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttcat 414  Q
    ||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||| ||||||||||    
T  18746390 ataagaagaaagaccatccacatttttggaccaaagaaatttgaaactaaatattttatcaagttcat 18746457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 412
Target Start/End: Original strand, 18755597 - 18755662
Alignment:
Q  347 ataagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttc 412  Q
    |||||||||||| |  ||| ||| |||||||||  | |||| ||||||||||||||||||||||||    
T  18755597 ataagaagaaaggcattccacatatttggaccaatgaaatttgaaactaaatattttgtcaagttc 18755662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 16880203 - 16880077
Alignment:
Q  20 acacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccata 119  Q
    |||||||||||||||| ||| || |||||||||||||||||||||| || |||| |||||||||||||  | | ||||||||||||||||||||||||||    
T  16880203 acacttccatatgctcttgtgccgatgcaatatctaatgtcaaagtgttgtgtttctttaataatgtccacatatgctatttttccatcataattccata 16880104  T
Q  120 tacaaaacaaatccccattctttgttg 146  Q
    | |||||||||| ||||||||||||||    
T  16880103 tgcaaaacaaattcccattctttgttg 16880077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 54122829 - 54122708
Alignment:
Q  20 acacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccata 119  Q
    |||||||||||||||  |||| | ||||||||||||||||||||||     |||||||||||||||||||| | || |||||||||||||||||||||||    
T  54122829 acacttccatatgcttatgtcacgatgcaatatctaatgtcaaagt-----gttgctttaataatgtcatcatatgttatttttccatcataattccata 54122735  T
Q  120 tacaaaacaaatccccattctttgttg 146  Q
    |   |||||||| | ||||||||||||    
T  54122734 tgtcaaacaaattctcattctttgttg 54122708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 48712632 - 48712753
Alignment:
Q  20 acacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccata 119  Q
    |||||||||||||||  |||| | ||||||||||||||||||||||     ||||||||||||| |||||| | || |||||||||||||||||||||||    
T  48712632 acacttccatatgcttatgtcacgatgcaatatctaatgtcaaagt-----gttgctttaataaagtcatcatatgttatttttccatcataattccata 48712726  T
Q  120 tacaaaacaaatccccattctttgttg 146  Q
    |   |||||||| | ||||||||||||    
T  48712727 tgtcaaacaaattctcattctttgttg 48712753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 42977974 - 42978095
Alignment:
Q  20 acacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccata 119  Q
    |||||||||||||||  |||| | ||||||||||||||||||||||     |||||||||||||  ||||| | || ||||||| |||||||||||||||    
T  42977974 acacttccatatgcttatgtcacgatgcaatatctaatgtcaaagt-----gttgctttaataacatcatcatatgttatttttacatcataattccata 42978068  T
Q  120 tacaaaacaaatccccattctttgttg 146  Q
    |   |||||||| | ||||||||||||    
T  42978069 tgtcaaacaaattctcattctttgttg 42978095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 19250314 - 19250188
Alignment:
Q  20 acacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccata 119  Q
    |||||| |||||| |||||||   |||||||||||||||||||||| || ||||||||||||||||||| | | ||||||||||||||||||||  ||||    
T  19250314 acactttcatatgatcctgtcatgatgcaatatctaatgtcaaagtgttgtgttgctttaataatgtcaacatatgctatttttccatcataatatcata 19250215  T
Q  120 tacaaaacaaatccccattctttgttg 146  Q
    |  ||||||||| | ||||||||||||    
T  19250214 tgtaaaacaaattcacattctttgttg 19250188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 41669048 - 41669112
Alignment:
Q  20 acacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcat 89  Q
    |||||||||||||||  |||| | |||||||||||||||||||||     ||||||||||||||||||||    
T  41669048 acacttccatatgcttatgtcacgatgcaatatctaatgtcaaag-----tgttgctttaataatgtcat 41669112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 1257722 - 1257601
Alignment:
Q  20 acacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccata 119  Q
    |||||| ||||||||  |||| | ||||||||||||||||||||||     |||||||||||||||||||| | || |||||||||||||||||||||||    
T  1257722 acactttcatatgcttatgtcacgatgcaatatctaatgtcaaagt-----gttgctttaataatgtcatcatatgttatttttccatcataattccata 1257628  T
Q  120 tacaaaacaaatccccattctttgttg 146  Q
    |   |||||||| | ||||||||||||    
T  1257627 tgtcaaacaaattctcattctttgttg 1257601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 8873295 - 8873416
Alignment:
Q  20 acacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccata 119  Q
    |||||||||||||||  |||| | ||||||||||||||||||||||     |||||||||||||||||||| | || |||||||||||||||||| ||||    
T  8873295 acacttccatatgcttatgtcacgatgcaatatctaatgtcaaagt-----gttgctttaataatgtcatcatatgttatttttccatcataatttcata 8873389  T
Q  120 tacaaaacaaatccccattctttgttg 146  Q
    |   ||||||||   ||||||||||||    
T  8873390 tgtcaaacaaattatcattctttgttg 8873416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 39102489 - 39102607
Alignment:
Q  22 acttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatata 121  Q
    |||||||||||||  |||| | ||||| ||||||||||||||||     |||||||||||||||||||| | || ||||||||||||||||||||||||     
T  39102489 acttccatatgcttatgtcacgatgca-tatctaatgtcaaagt-----gttgctttaataatgtcatcatatgttatttttccatcataattccatatg 39102582  T
Q  122 caaaacaaatccccattctttgttg 146  Q
      |||||||| | ||||||||||||    
T  39102583 tcaaacaaattctcattctttgttg 39102607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 36620517 - 36620399
Alignment:
Q  22 acttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatata 121  Q
    |||||||||||||  |||| | ||||| ||||||||||||||||     |||||||||||||||||||| | || ||||||||||||||||||||||||     
T  36620517 acttccatatgcttatgtcacgatgca-tatctaatgtcaaagt-----gttgctttaataatgtcatcatatgttatttttccatcataattccatatg 36620424  T
Q  122 caaaacaaatccccattctttgttg 146  Q
       ||||||| | ||||||||||||    
T  36620423 tcgaacaaattctcattctttgttg 36620399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 31657928 - 31657807
Alignment:
Q  20 acacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccata 119  Q
    |||||||||| ||||  |||| | ||||||||||||||||||||||     ||||||||||||| |||||| | || |||||||||||||||||||||||    
T  31657928 acacttccatgtgcttatgtcacgatgcaatatctaatgtcaaagt-----gttgctttaataacgtcatcatatgttatttttccatcataattccata 31657834  T
Q  120 tacaaaacaaatccccattctttgttg 146  Q
    |   |||||||| | ||||||||||||    
T  31657833 tgtcaaacaaattctcattctttgttg 31657807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 29748719 - 29748679
Alignment:
Q  48 aatatctaatgtcaaagtcttctgttgctttaataatgtca 88  Q
    |||||||||||||||||| || |||||||||||||| ||||    
T  29748719 aatatctaatgtcaaagtgttgtgttgctttaataacgtca 29748679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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