View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8119_low_5 (Length: 416)
Name: NF8119_low_5
Description: NF8119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8119_low_5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 41 - 416
Target Start/End: Complemental strand, 40722202 - 40721827
Alignment:
| Q |
41 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40722202 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttatgttcttgcaaga |
40722103 |
T |
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| Q |
141 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctgaaaattaaagacctttattgttgatcaaatattcaccctggttcc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
40722102 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggtttc |
40722003 |
T |
|
| Q |
241 |
attttcctccacaagtcgagtcataccgctatttctgtgatcctctggttctgtccttcaagtcgtaccactgtatatgtttaatgttgcatctctgagt |
340 |
Q |
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|||||| | ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40722002 |
gttttccacgacaagtcgagtcataccgctatttccgtattcctctggttctgtccttcaagtcgtaccactgtatatgtttaatgttgcatctctgagt |
40721903 |
T |
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| Q |
341 |
gttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggtttcagtttgttgtt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40721902 |
gttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggtttgagtttgttgtt |
40721827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 41 - 416
Target Start/End: Complemental strand, 26795241 - 26794853
Alignment:
| Q |
41 |
caaacgtaaacaccctcttcttctt---ttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgca |
137 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
26795241 |
caaacgtaaacaccctcttcttcttcttttgttctctagctgtctttttcccatgcttttctacagctgttaccaccataaacatggttctgttcttgca |
26795142 |
T |
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| Q |
138 |
agatccatcacaaaatagaggtagttttagattttatattgatttccttccaattctgaaaattaaagacctttattgttgatcaaatattcaccctggt |
237 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| || |
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| T |
26795141 |
agatccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaatattcaccctagt |
26795042 |
T |
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| Q |
238 |
tccattttcctccacaagtcgagtcataccgctatt----------tctgtgatcctctggttctgtccttcaagtcgtaccactgtatatgtttaatgt |
327 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26795041 |
tccgttttcctccacaagtcgagtcataccgctatttatgtgttcctctgtattcctctggttctgtccttcaagtcgtaccactgtatatgtttaatgt |
26794942 |
T |
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| Q |
328 |
tgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggtttcagtttgttgtt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26794941 |
tgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggtttcagtttgttgtt |
26794853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 41 - 287
Target Start/End: Complemental strand, 16003858 - 16003612
Alignment:
| Q |
41 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
140 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16003858 |
caaacgtaaacaccctcttcttcttttattctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
16003759 |
T |
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| Q |
141 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctgaaaattaaagacctttattgttgatcaaatattcaccctggttcc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16003758 |
tccatcacaaaatagaggtagttttagattttatattgatttcctttcaattctcaaaattaaagacctttgttgttgatcaaatattcaccctggttcc |
16003659 |
T |
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| Q |
241 |
attttcctccacaagtcgagtcataccgctatttctgtgatcctctg |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16003658 |
attttcctccacaagtcgagtcataccgctatttctgtgttcctctg |
16003612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 9e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 27221880 - 27222063
Alignment:
| Q |
41 |
caaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttaccaccataaacatggttctgttcttgcaaga |
140 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
27221880 |
caaacgtaaacaacctcttcttcttttgttctctagctgtctttttcccatgcttttctgcagctcttaccaccataaatatggttctgttcttgcaaga |
27221979 |
T |
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| Q |
141 |
tccatcacaaaatagaggtagttttagattttatattgatttccttccaattctgaaaattaaagacctttattgttgatcaaa |
224 |
Q |
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| T |
27221980 |
tccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaagacctttgttgttgatcaaa |
27222063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 225 - 402
Target Start/End: Original strand, 27222822 - 27222999
Alignment:
| Q |
225 |
tattcaccctggttccattttcctccacaagtcgagtcataccgctatttctgtgatcctctggttctgtccttcaagtcgtaccactgtatatgtttaa |
324 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
27222822 |
tattcaccctggttccgttttcctccacaagtcgagtcatactgctatttctgtattcctctggttctgcccttcaagtcgtatcactgtatatgtttaa |
27222921 |
T |
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| Q |
325 |
tgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggt |
402 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27222922 |
tgttgcatcactgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggt |
27222999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 416
Target Start/End: Complemental strand, 3384768 - 3384672
Alignment:
| Q |
319 |
gtttaatgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggtttcagtttgttgtt |
416 |
Q |
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||||||||||||| |||||||| | ||||||||| ||||||| |||| |||||||||||||| |||||||||| |||||| ||||| ||||||||| |
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| T |
3384768 |
gtttaatgttgcaactctgagtctgctttctcttaattagttaattgctttgttcctcatataaaaacctaataattcctt-ctttcaatttgttgtt |
3384672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 416
Target Start/End: Complemental strand, 5155564 - 5155468
Alignment:
| Q |
319 |
gtttaatgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggtttcagtttgttgtt |
416 |
Q |
| |
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|||||||||| || |||||||| | ||||||||| ||||||| ||| ||||||||||||||| |||||||||| |||||| ||||| ||||||||| |
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| T |
5155564 |
gtttaatgttccaactctgagtctgctttctcttaattagttaatttccttgttcctcatataaaaacctaataattcctt-ctttcaatttgttgtt |
5155468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 392
Target Start/End: Original strand, 8530684 - 8530757
Alignment:
| Q |
319 |
gtttaatgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaata |
392 |
Q |
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||||||||||||| |||||||| | ||||||||| ||||||| ||| ||||||||||||||| |||||||||| |
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| T |
8530684 |
gtttaatgttgcaactctgagtctactttctcttaattagttaattaccttgttcctcatataaaaacctaata |
8530757 |
T |
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