View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8119_low_6 (Length: 403)
Name: NF8119_low_6
Description: NF8119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8119_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 5 - 387
Target Start/End: Complemental strand, 34222361 - 34221978
Alignment:
| Q |
5 |
gctatattattctcatgtctctcttttgccgtcaatcatgtcgttgttgatgtcagagcatgaaccatgaattaattcatgattggctagtgtgctatac |
104 |
Q |
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| T |
34222361 |
gctacattattttcatgcctctcttttgccgtcaatcatgtcgttgttgatgtcagagcatgaaccatgaattaattcatgattggctagtgtgctatac |
34222262 |
T |
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| Q |
105 |
tctttgtgattttgtgtatacaaaaattaattacacgttactattattgtttttctcaagtaattattgttatcattatagaaaggnnnnnnnnn-catg |
203 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34222261 |
tctttgtgattttgtgtgtacaaaaattaattacacgttactattattgtttttctcaagtaattattgttatcattatagaaaggaaaaaaaaaacatg |
34222162 |
T |
|
| Q |
204 |
atccatttaagcatcttgatgcttagaacttgtgttgtttattgggtctaatattacaatagataatattgttgtttgtaagagaagagtgtattgaatt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34222161 |
atccatttaagcatcttgatgcttagaacttgtgttgtttattgggtctactattacaatagataatattgttgtttgtaagagaagagtgtattgaatt |
34222062 |
T |
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| Q |
304 |
ttccatgttgcatcaaaacgattcctatgaacagtttcttacataagttaaatgcatccaaactatttatgattagtgactaat |
387 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34222061 |
ttccatgttgcatcaaaataattcctatgaacagtttcttacataagttaaatgcatccaaactatttatgattagtgactaat |
34221978 |
T |
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