View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8119_low_9 (Length: 327)

Name: NF8119_low_9
Description: NF8119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8119_low_9
NF8119_low_9
[»] chr6 (7 HSPs)
chr6 (68-210)||(34042694-34042836)
chr6 (193-308)||(34042526-34042641)
chr6 (73-138)||(34041080-34041145)
chr6 (14-53)||(34042822-34042861)
chr6 (208-251)||(34040900-34040944)
chr6 (134-169)||(34042651-34042686)
chr6 (268-308)||(34040847-34040887)


Alignment Details
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 34042836 - 34042694
Alignment:
Q  68 taccaaacccttcatggcttgcaagtccaagtcaatcttcttatctaaatccacctcattctaaataacaagatcaaatatttaaattacatgagctgct 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34042836 taccaaacccttcatggcttgcaagtccaagtcaatcttcttatctaaatccacctcattctaaataacaagatcaaatatttaaattacatgagctgct 34042737  T
Q  168 taacaatagacaatagaacttctgttcttaaatagtgaatttt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34042736 taacaatagacaatagaacttctgttcttaaatagtgaatttt 34042694  T

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Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 193 - 308
Target Start/End: Complemental strand, 34042641 - 34042526
Alignment:
Q  193 tcttaaatagtgaattttaatgatttcttttataattaataatatggagaggattctttatcnnnnnnntatatgtggagatgattctaactgattttaa 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  34042641 tcttaaatagtgaattttaatgatttcttttataattaataatatggagaggattctttatcaaaaaaatatatgtggagatgattctaactgattttaa 34042542  T
Q  293 taatcctattatcttt 308  Q
    ||||||||| ||||||    
T  34042541 taatcctatcatcttt 34042526  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 34041145 - 34041080
Alignment:
Q  73 aacccttcatggcttgcaagtccaagtcaatcttcttatctaaatccacctcattctaaataacaa 138  Q
    ||||||||||| |||   |||||||||||||||||||||| |||||||||||||| ||||||||||    
T  34041145 aacccttcatgacttatgagtccaagtcaatcttcttatccaaatccacctcattttaaataacaa 34041080  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 34042861 - 34042822
Alignment:
Q  14 ttattctccacatatattattctaataccaaacccttcat 53  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34042861 ttattctccacatatattattctaataccaaacccttcat 34042822  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 34040944 - 34040900
Alignment:
Q  208 tttaatgatttcttttataa-ttaataatatggagaggattcttt 251  Q
    |||||||||||||||||||| || |||||||||||||||||||||    
T  34040944 tttaatgatttcttttataaattgataatatggagaggattcttt 34040900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 34042686 - 34042651
Alignment:
Q  134 aacaagatcaaatatttaaattacatgagctgctta 169  Q
    |||||||||||||||||| |||||||||||||||||    
T  34042686 aacaagatcaaatatttatattacatgagctgctta 34042651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 34040887 - 34040847
Alignment:
Q  268 tggagatgattctaactgattttaataatcctattatcttt 308  Q
    |||||| |||| ||||||||||||||||||||||| |||||    
T  34040887 tggagaggattttaactgattttaataatcctattctcttt 34040847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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