View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8120_high_3 (Length: 313)
Name: NF8120_high_3
Description: NF8120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8120_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 48098815 - 48099090
Alignment:
| Q |
17 |
acaatacaatatgtgaaacaaaacaatggtaacctacaatcaaatagtccaaacaacagtatattaaaccaagaacaaatcgaggaacatatgtgtatag |
116 |
Q |
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| T |
48098815 |
acaatacaatatgtgaaacaaaacaatggtaacctacaatcaaatagtccaaacaacagtatattaaaccaagaacaaatcgaggaacatatgtgtatag |
48098914 |
T |
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| Q |
117 |
caaattcacaatcaaattaaagaacatagataagagagtagaggaataaatacaacaatat--tattcaaccaattcgatccaaattgatctacatctga |
214 |
Q |
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| T |
48098915 |
caaattcacaatcaaattaaagaacatagataagagagtagaggaataaatacaacaatattatattcaaccaattcgatccaaattgatctacatctga |
48099014 |
T |
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| Q |
215 |
aggaaggataaactctttaatcctctataaatgagcctttacaagagataaaattaagttacaaaaaattaacttt |
290 |
Q |
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| T |
48099015 |
aagaagaataaactctctaatcctctatgaatgagcctttacaagagataaaaataagttacaaaaaattaacttt |
48099090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 42685288 - 42685231
Alignment:
| Q |
106 |
tatgtgtatagcaaattcacaatca-aattaaagaacatagataagagagtagaggaa |
162 |
Q |
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| T |
42685288 |
tatgtgtatagcaaatccacattcataaccaaagaacagagataagagagtagaggaa |
42685231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 4649377 - 4649487
Alignment:
| Q |
83 |
aaccaagaacaaatcgaggaacatatgtgtatagcaaattcacaatcaaattaaagaacatagataagagagtagaggaataaatacaacaatattattc |
182 |
Q |
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| T |
4649377 |
aaccaagaataaatctagcaacttatgtatatatcaaattcataatcaaattaaagaacacaaataaaagagtagaggaataaacacactaaaattgttc |
4649476 |
T |
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| Q |
183 |
aaccaattcga |
193 |
Q |
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| T |
4649477 |
aaccacttcga |
4649487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 4649511 - 4649568
Alignment:
| Q |
228 |
tctttaatcctctataaatgagcctttacaagagataaaattaagttacaaaaaatta |
285 |
Q |
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| T |
4649511 |
tcttcaatccgctataaataagtctttacaagagatataaataagttacaataaatta |
4649568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 10274434 - 10274545
Alignment:
| Q |
38 |
aacaatggtaacctacaatcaaatagtccaaacaacagtatattaaaccaagaacaaatcgaggaacatatgtgtatagcaaattcacaatcaaattaaa |
137 |
Q |
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|||||||| |||| |||| |||| ||||||| ||||| ||||| |||| |||||||||| || ||| ||||||||||| ||| |||||||||| ||| |
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| T |
10274434 |
aacaatggcaaccaacaaccaaacagtccaagcaaca--atattcaacctagaacaaatctagcaacctatgtgtatagaaaaaccacaatcaaaccaaa |
10274531 |
T |
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| Q |
138 |
gaacatagataaga |
151 |
Q |
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||||| |||||||| |
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| T |
10274532 |
gaacaaagataaga |
10274545 |
T |
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