View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8120_high_8 (Length: 250)
Name: NF8120_high_8
Description: NF8120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8120_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 48099308 - 48099550
Alignment:
| Q |
1 |
aaatagtttatcttttttcaagtaaatcttgtttagctagttcaacaaaacctttttcattaaca-gccgtaaccttaaaagttatagattgattttaac |
99 |
Q |
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| T |
48099308 |
aaatagtttatcttttttcaagtaaattttgtttagctagttcaacaaaacctctttaattaacatgtcgtaaccttaaaagttatagattgattttaac |
48099407 |
T |
|
| Q |
100 |
ataagagtcttgactagttatatatgcatgaccaacaacagtaaagccatcgaaaatatataaactacacattttggtacctttagcaaatatcaataca |
199 |
Q |
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| T |
48099408 |
acaagagtcttgactaattatatattcatgaccaacaacagtaaaaccatcgaaaatatataaactacacattctggtacctttagcaattatcaataca |
48099507 |
T |
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| Q |
200 |
ccatacaaattttttaacatatcatgctcaatactagtataat |
242 |
Q |
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| T |
48099508 |
ccatacaaattttttaacatgtcatgctcaataccagtgtaat |
48099550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 5146330 - 5146387
Alignment:
| Q |
7 |
tttatcttttttcaagtaaatcttgtttagctagttcaacaaaacctttttcattaaca |
65 |
Q |
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| T |
5146330 |
tttatcttttttta-gcaaatcttgtttagctagttcaactaaacctctttcactaaca |
5146387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 26309012 - 26309141
Alignment:
| Q |
101 |
taagagtcttgactagttatatatgcatgaccaacaacagtaaagccatcgaaaatatataaactacacattttggtacctttagcaaatatcaatacac |
200 |
Q |
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| T |
26309012 |
taagagtcttgactaactataaatgcatgaccaataacaataaaatcatctaaaatgtataagccatacatttttagacctttagtaattcttaatgcac |
26309111 |
T |
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| Q |
201 |
catacaaattttttaacatatcatgctcaa |
230 |
Q |
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||| || |||||||||| |||||||||| |
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| T |
26309112 |
catgtgaaatttttaacatgtcatgctcaa |
26309141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 40771665 - 40771714
Alignment:
| Q |
101 |
taagagtcttgactagttatatatgcatgaccaacaacagtaaagccatc |
150 |
Q |
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| T |
40771665 |
taagagtattgactagatatagatgcatgaccaataacagtaaaaccatc |
40771714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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