View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8120_low_1 (Length: 630)

Name: NF8120_low_1
Description: NF8120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8120_low_1
NF8120_low_1
[»] chr5 (12 HSPs)
chr5 (1-611)||(8948501-8949108)
chr5 (1-192)||(16668640-16668830)
chr5 (85-180)||(18465485-18465580)
chr5 (106-224)||(28070103-28070220)
chr5 (106-192)||(13362799-13362885)
chr5 (106-191)||(23335657-23335742)
chr5 (106-193)||(2827017-2827104)
chr5 (125-225)||(34329124-34329223)
chr5 (118-192)||(25017179-25017253)
chr5 (129-192)||(33868185-33868248)
chr5 (151-192)||(42512228-42512269)
chr5 (156-192)||(37456710-37456746)
[»] chr6 (9 HSPs)
chr6 (1-222)||(29157226-29157444)
chr6 (1-193)||(18611217-18611408)
chr6 (106-191)||(24737641-24737726)
chr6 (122-222)||(34399641-34399740)
chr6 (106-222)||(33346321-33346436)
chr6 (85-223)||(15034900-15035041)
chr6 (106-180)||(877249-877323)
chr6 (146-192)||(35119264-35119310)
chr6 (156-192)||(7089112-7089148)
[»] chr2 (12 HSPs)
chr2 (1-179)||(4281634-4281811)
chr2 (106-222)||(18298061-18298176)
chr2 (1-180)||(25995328-25995499)
chr2 (106-228)||(20709768-20709889)
chr2 (106-222)||(25192892-25193007)
chr2 (125-180)||(14551288-14551343)
chr2 (125-192)||(4579787-4579854)
chr2 (102-163)||(43822412-43822473)
chr2 (129-192)||(5098746-5098809)
chr2 (131-192)||(36636912-36636973)
chr2 (156-192)||(1292179-1292215)
chr2 (156-192)||(9143615-9143651)
[»] chr1 (14 HSPs)
chr1 (1-222)||(16115851-16116071)
chr1 (72-192)||(35198097-35198217)
chr1 (85-192)||(37639371-37639478)
chr1 (106-222)||(18056784-18056899)
chr1 (106-222)||(22348039-22348154)
chr1 (106-180)||(23320035-23320109)
chr1 (106-180)||(179649-179723)
chr1 (106-180)||(30802437-30802511)
chr1 (106-192)||(45889625-45889711)
chr1 (106-180)||(8402261-8402335)
chr1 (1-55)||(35198014-35198068)
chr1 (156-192)||(11421624-11421660)
chr1 (156-192)||(34369690-34369726)
chr1 (129-193)||(51420374-51420437)
[»] chr4 (15 HSPs)
chr4 (1-149)||(48077711-48077857)
chr4 (85-191)||(50563658-50563764)
chr4 (106-222)||(27764240-27764355)
chr4 (106-192)||(4168387-4168473)
chr4 (106-193)||(637882-637969)
chr4 (106-192)||(22181195-22181281)
chr4 (106-192)||(26447362-26447448)
chr4 (106-192)||(36621651-36621737)
chr4 (106-222)||(45255975-45256090)
chr4 (106-192)||(38485624-38485710)
chr4 (106-180)||(51837041-51837115)
chr4 (106-222)||(21097140-21097255)
chr4 (131-180)||(6386516-6386565)
chr4 (145-193)||(1729604-1729652)
chr4 (156-220)||(29826606-29826669)
[»] chr7 (16 HSPs)
chr7 (85-192)||(5757416-5757523)
chr7 (85-193)||(32090606-32090714)
chr7 (106-192)||(46573450-46573536)
chr7 (106-222)||(30428873-30428988)
chr7 (106-186)||(33797966-33798046)
chr7 (106-222)||(46024027-46024142)
chr7 (1-60)||(32090759-32090818)
chr7 (106-222)||(15974886-15975001)
chr7 (125-192)||(28396751-28396818)
chr7 (122-222)||(12279641-12279740)
chr7 (122-222)||(12279745-12279844)
chr7 (125-192)||(48690924-48690991)
chr7 (125-180)||(48691033-48691088)
chr7 (130-192)||(48305265-48305327)
chr7 (131-192)||(44141226-44141287)
chr7 (28-61)||(5757566-5757599)
[»] chr8 (13 HSPs)
chr8 (1-192)||(15181820-15182016)
chr8 (106-222)||(32987395-32987510)
chr8 (106-222)||(39021975-39022090)
chr8 (106-222)||(7058114-7058229)
chr8 (106-192)||(4836651-4836737)
chr8 (106-192)||(4842096-4842182)
chr8 (106-192)||(7614097-7614183)
chr8 (106-192)||(8550533-8550619)
chr8 (106-192)||(15260801-15260887)
chr8 (125-222)||(1208709-1208805)
chr8 (106-145)||(2750101-2750140)
chr8 (133-174)||(1671850-1671891)
chr8 (156-192)||(41451135-41451171)
[»] chr3 (18 HSPs)
chr3 (106-220)||(50754008-50754121)
chr3 (106-192)||(52987600-52987686)
chr3 (106-222)||(51362388-51362503)
chr3 (85-180)||(23699369-23699464)
chr3 (85-180)||(23717824-23717919)
chr3 (85-180)||(23736280-23736375)
chr3 (106-222)||(8718101-8718216)
chr3 (106-222)||(9069988-9070103)
chr3 (106-206)||(16277364-16277463)
chr3 (106-223)||(19385265-19385381)
chr3 (106-192)||(39099226-39099312)
chr3 (106-192)||(7045250-7045336)
chr3 (1-61)||(23699507-23699567)
chr3 (1-61)||(23717962-23718022)
chr3 (1-61)||(23736418-23736478)
chr3 (85-149)||(23755351-23755415)
chr3 (1-61)||(23755458-23755518)
chr3 (122-180)||(17627197-17627255)
[»] scaffold0097 (1 HSPs)
scaffold0097 (106-228)||(13607-13728)
[»] scaffold0238 (1 HSPs)
scaffold0238 (106-222)||(25182-25297)
[»] scaffold0194 (1 HSPs)
scaffold0194 (106-192)||(27636-27722)
[»] scaffold0337 (1 HSPs)
scaffold0337 (122-193)||(7045-7116)
[»] scaffold0544 (1 HSPs)
scaffold0544 (123-221)||(10642-10739)


Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Complemental strand, 8949108 - 8948501
Alignment:
Q  1 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnngtcaaaataaagatatacctctttccttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||| ||||||||||||||||||||    
T  8949108 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagaggtttttttttgtcaaaatgaagatatacctctttccttt 8949009  T
Q  101 attccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgatttt 200  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||| |||| |||||||  || |||||||||||||      ||||||  |||||     
T  8949008 attccttgatttggtgtagtttgagaagcctaggattat--cacgtgtacactaaatctgatagttttgaagtgtttatgc-----gcataa--gatttc 8948918  T
Q  201 cttatgtaggataacttttgcctccactcacgtctttgatggaccttcacgtcatgtcttgtttagagcaagtaggaaacaaaaaggacatgagaaagta 300  Q
     ||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8948917 attatgcatgataacttttgcctccactcacgtctttggtggaccttcacgtcatgtcttgtttagagcaagtaggaaacaaaaaggacatgagaaagta 8948818  T
Q  301 aacttttaaaacataattcaaaatcatttgcttctcattattgtcccccgtcatgtcttgtttagagcaatcattaatgaccgtgttggacgaatttatg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8948817 aacttttaaaacataattcaaaatcatttgcttctcattattgtcccccgtcatgtcttgtttagagcaatcattaatgaccgtgttggacgaatttatg 8948718  T
Q  401 catgttatttggcaactaaaaccaaaccatttggtattgtttgcattattatgaatatgtgaacctttattgttgtattgagatcaattcgattttggga 500  Q
    ||||||||||||||||||||||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8948717 catgttatttggcaactaaaaccaaaccatttggtatcgtttgca---ttatgaatatgtgaacctttattgttgtattgagatcaattcgattttggga 8948621  T
Q  501 tctac---------gtccacaactctgtatgagtttaaacttagtatacacataccatttcgatgaataccaagtacatcgaaatacttagtactttgac 591  Q
    |||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8948620 tctactgtaaaatggtccacaactctgtatgagtttaaacttagtatacacataccatttcgatgaatactaagtacatcgaaatacttagtactttgac 8948521  T
Q  592 attatatttaaactttacac 611  Q
    ||||||||||||||||||||    
T  8948520 attatatttaaactttacac 8948501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 16668640 - 16668830
Alignment:
Q  1 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnngtcaaaataaagatatacctctttccttt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||          |||||||| ||||||||||||||||||||    
T  16668640 taaggtggcgctggtctgaatgtcctagagagagaagtgagcaaagcatttttagtgagag-gttttttttgtcaaaatgaagatatacctctttccttt 16668738  T
Q  101 attccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | |||||||||    
T  16668739 attctttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtgcataa 16668830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 18465485 - 18465580
Alignment:
Q  85 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 180  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||||||||    
T  18465485 tatacctctttcctttattccttgatttggtgtagtttgagaagtctaagattattacacgtgtacactagatctgatggttgtgaagtgtttatg 18465580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 28070103 - 28070220
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||  |||||||||||||||| ||||||||| || ||||| |||||    
T  28070103 ttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatagttgtgaagtgtttatgcacggtgcat-aaggatttccttat 28070201  T
Q  206 gtaggataacttttgcctc 224  Q
    | |  ||||||||||||||    
T  28070202 gcaccataacttttgcctc 28070220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 13362885 - 13362799
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| |||||||||||||||| |||||||||||    
T  13362885 ttgatttggtgtagtttgagaagcctatgattattacacgtatacactagatctgatggttgtgaagtgtttatgcacggtgcataa 13362799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 23335657 - 23335742
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcata 191  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||    
T  23335657 ttgatttggtgtagtttgagaagcctatgattattacacgtgtacactagatctgatggttgtgaaatgtttatgcacggtgcata 23335742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 2827017 - 2827104
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaa 193  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| |||| ||||||||||| |||||| |||||    
T  2827017 ttgatttggtgtagtttgagaagcctaagataattacacgtgtacactagatctgatggttgtaaagtgtttatgcacggtggataaa 2827104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 34329223 - 34329124
Alignment:
Q  125 gaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttatgtaggataacttttgcctc 224  Q
    |||||||| ||||||||  |||||| ||||||||||||| |||||||||||||||| |||||||||||| ||||| |||||| |  ||||||||||||||    
T  34329223 gaagcctatgattattattcgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaa-gatttccttatgcaccataacttttgcctc 34329125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 25017179 - 25017253
Alignment:
Q  118 agtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||||| ||||  ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  25017179 agtttgagaaacctaaaattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 25017253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 33868248 - 33868185
Alignment:
Q  129 cctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||||||||||| |||| | || ||| |||| |||||||||||||||| | |||||||||    
T  33868248 cctaggattattacacatgtaaaataaatcagatggttgtgaagtgtttatgcagggtgcataa 33868185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 42512269 - 42512228
Alignment:
Q  151 actagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||||||||| |||||||||||||||| |||||| ||||    
T  42512269 actagatctgatggttgtgaagtgtttatgcacggtggataa 42512228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 37456746 - 37456710
Alignment:
Q  156 atctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||| |||||| |||||||||||||||||||||    
T  37456746 atctgatggttgtgatgtgtttatgtacggtgcataa 37456710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 5e-67; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 29157444 - 29157226
Alignment:
Q  1 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnngtcaaaataaagatatacctctttccttt 100  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||         |||||||| ||||||||||||||||||||    
T  29157444 taaggtggcgctggtttgaatgtcctggatagagaagtgagcaaagcatttttagtgagagattttttt--gtcaaaatgaagatatacctctttccttt 29157347  T
Q  101 attccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgatttt 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| ||||||||||| ||||||||| || |||||     
T  29157346 attccttgatttggtgtagtttgagaagcctagtattattacacgtgtacactagatctgatggttgtaaagtgtttatgcacggtgcat-aaggatttc 29157248  T
Q  201 cttatgtaggataacttttgcc 222  Q
    ||| || | |||||||||||||    
T  29157247 cttgtgcatgataacttttgcc 29157226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 18611408 - 18611217
Alignment:
Q  1 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnngtcaaaataaagatatacctctttccttt 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||          |||||||| ||||||||||||||||||||    
T  18611408 taaggtggcgctggtttaaatgtcctagagagagaagtgagcaaagcatttttaatgagag-gttttttttgtcaaaatgaagatatacctctttccttt 18611310  T
Q  101 attccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaa 193  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| |  |||||||||    
T  18611309 attccttgatttggtgtggtttgagaagcctatgattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagagtgcataaa 18611217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 24737641 - 24737726
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcata 191  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||    
T  24737641 ttgatttggtgtagtttaagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcata 24737726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 34399740 - 34399641
Alignment:
Q  122 tgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttatgtaggataacttttgc 221  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| || ||||| |||||| |  |||||||||||    
T  34399740 tgagaagcctaggattattacacgtgtacactagatctgatgattgtgaagtgtttatatacggtgcat-aaggatttccttatgcaccataacttttgc 34399642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 33346321 - 33346436
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    ||||||||  |||||||||||||||||  ||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||| || ||||| |||||    
T  33346321 ttgatttgacgtagtttgagaagcctataattattacacgtgtacactagatttgatggttgtgaagtgtttatgcacggtgcat-aaggatttccttat 33346419  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  33346420 gcaccataacttttgcc 33346436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 15034900 - 15035041
Alignment:
Q  85 tatacctctttcctttattccttgatttggtgtagtttgaga-----agcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttat 179  Q
    |||||||||||| |||||||||||||||||||||||||||||     |||||| ||||||||||| |||| ||||||||||||| |||||||   |||||    
T  15034900 tatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaatgatttat 15034998  T
Q  180 gtacggtgcataaatgattttcttatgtaggataacttttgcct 223  Q
    | ||||||||| || ||||| |||||| |  |||||||||||||    
T  15034999 gcacggtgcat-aaggatttccttatgcaccataacttttgcct 15035041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 877323 - 877249
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 180  Q
    |||||||||||||||||||||||| || |||||||| ||||||| ||  ||||| ||| ||||||||||||||||    
T  877323 ttgatttggtgtagtttgagaagcttatgattattatacgtgtacacctgatctaatggttgtgaagtgtttatg 877249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 35119310 - 35119264
Alignment:
Q  146 tgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||| ||||||||||||| |||||||||||||||| |||||||||||    
T  35119310 tgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 35119264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 7089148 - 7089112
Alignment:
Q  156 atctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  7089148 atctgatgattgtgatgtgtttatgcacggtgcataa 7089112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 4e-61; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 4281634 - 4281811
Alignment:
Q  1 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnngtcaaaataaagatatacctctttccttt 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||| ||||||||||||||||||||    
T  4281634 taaggtgacgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagag-gttttttttgtcaaaatgaagatatacctctttccttt 4281732  T
Q  101 attccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttat 179  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  4281733 attccttgatttgctgtagtttgagaaacctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 4281811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 18298061 - 18298176
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| || ||||| |||||    
T  18298061 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcat-aaggatttccttat 18298159  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  18298160 gcaccataacttttgcc 18298176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 25995499 - 25995328
Alignment:
Q  1 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnn--gtcaaaataaagatatacctctttcct 98  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||            |||||||          ||| ||||||    
T  25995499 taaggtggcgctggtttgaatgtcctagagagagaagtgaacaaagcatttttagtgagaggtttttttttttgtcaaaa----------cctatttcct 25995410  T
Q  99 ttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 180  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||| ||||||||| ||||||    
T  25995409 ttattccttgatttggtgtaatttgagtagcctaggattattacacgtgtacactaaatctgatggttgtgaagtatttatg 25995328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 20709889 - 20709768
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||| || || ||||| |||||    
T  20709889 ttgatttggtgtagtttgagaagcgtaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacggtggat-aaggatttccttat 20709791  T
Q  206 gtaggataacttttgcctccact 228  Q
    | |  |||||||||||| |||||    
T  20709790 gcaccataacttttgccaccact 20709768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 25193007 - 25192892
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||| ||||||||| || ||||| |||||    
T  25193007 ttgatttggtgtaatttgagaagcctagaattattacacgtgtacactagatctaatggttgtgaagtgtttatgcacggtgcat-aaggatttccttat 25192909  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  25192908 gcaccataacttttgcc 25192892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 14551288 - 14551343
Alignment:
Q  125 gaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 180  Q
    |||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||    
T  14551288 gaagcctaggattattacacatgtacactagatctgatggttgtgaagtgtttatg 14551343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 4579787 - 4579854
Alignment:
Q  125 gaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||| || |||||||||||||||| ||||||||||||| |||| ||||||||||| | |||||||||    
T  4579787 gaagcataagattattacacgtgtacactagatctgatggttgtaaagtgtttatgcatggtgcataa 4579854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 43822473 - 43822412
Alignment:
Q  102 ttccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatg 163  Q
    ||||||||||| ||||| ||| |||| ||||||||||| ||||||||| |||||||||||||    
T  43822473 ttccttgattttgtgtaatttaagaaacctaggattatcacacgtgtacactagatctgatg 43822412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 5098809 - 5098746
Alignment:
Q  129 cctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||||||||||||||||| | || || ||||| |||||||||||||||| | |||||||||    
T  5098809 cctaggattattacacgtgtacaataaatttgatggttgtgaagtgtttatgcagggtgcataa 5098746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 36636912 - 36636973
Alignment:
Q  131 taggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||||||||||||||| |  | |||||||| |||||||||||||||||| ||| |||||    
T  36636912 taggattattacacgtgtaaaacaaatctgatggttgtgaagtgtttatgtagggtacataa 36636973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 1292179 - 1292215
Alignment:
Q  156 atctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||| |||||| |||||||||||||||||||||    
T  1292179 atctgatggttgtgatgtgtttatgtacggtgcataa 1292215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 9143651 - 9143615
Alignment:
Q  156 atctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  9143651 atctgatgattgtgatgtgtttatgcacggtgcataa 9143615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 6e-51; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16116071 - 16115851
Alignment:
Q  1 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnngtcaaaataaagatatacctctttccttt 100  Q
    |||||| ||| |||||||||||||||||||||||||||||  ||| |||||| ||||||||          || ||||| ||||||||||||||||||||    
T  16116071 taaggtcgcgttggtttgaatgtcctagagagagaagtgacgaaaacattttcagtgagaggtttttttttgtaaaaatgaagatatacctctttccttt 16115972  T
Q  101 attccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgatttt 200  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||||| | ||||| ||||| |||||||||||||||| ||||||||| || |||||     
T  16115971 attccttgatttggtgtagtttaagaagtcttggattattacacgtgtacattagatttgatggttgtgaagtgtttatgcacggtgcat-aaggatttc 16115873  T
Q  201 cttatgtaggataacttttgcc 222  Q
    |||||| | |||||||||||||    
T  16115872 cttatgcatgataacttttgcc 16115851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 72 - 192
Target Start/End: Original strand, 35198097 - 35198217
Alignment:
Q  72 gtcaaaataaagatatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaa 171  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||| |||||||||||||  ||||||    
T  35198097 gtcaaaatgaagatatacctctttcctttatttcttgattttgtgtagtttgaaaagtctaggattattacacgtgtacactagatctgatggctgtgaa 35198196  T
Q  172 gtgtttatgtacggtgcataa 192  Q
    ||||||||| | |||||||||    
T  35198197 gtgtttatgcagggtgcataa 35198217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 37639478 - 37639371
Alignment:
Q  85 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacg 184  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||| ||||||||||||| |||||||||||||||| | |    
T  37639478 tatacctctttcctttattccttgatttggtgtagtttgagaagtctataattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagg 37639379  T
Q  185 gtgcataa 192  Q
    ||||||||    
T  37639378 gtgcataa 37639371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 18056899 - 18056784
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| || ||||| |||||    
T  18056899 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcat-aaggatttccttat 18056801  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  18056800 gcaccataacttttgcc 18056784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 22348154 - 22348039
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||  |||||||| || ||||| |||||    
T  22348154 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatatgatggttgtgaagtgtttatgcgcggtgcat-aaggatttccttat 22348056  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  22348055 gcaccataacttttgcc 22348039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 23320035 - 23320109
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 180  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  23320035 ttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatg 23320109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 179723 - 179649
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 180  Q
    |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  179723 ttgatttggtgtagtttgagaagcttgggattattacacgtgtacactagatctgatggttgtgaagtgtttatg 179649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 30802511 - 30802437
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 180  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  30802511 ttgatttggtgtagtttgagaagcctaagattattacacgtgtacactagatctgatggttgtgaaatgtttatg 30802437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 45889711 - 45889625
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| || |||||||| |||||| ||||    
T  45889711 ttgatttggtgtagtttgagaagcctaagattattacacatgtatactagatctgatggttgtaaaatgtttatgcacggtggataa 45889625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 8402261 - 8402335
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 180  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||||| || |||||||||||||    
T  8402261 ttgatttggtttagtttgagaaacctaggattattacatgtgtacactagatctgatggttatgaagtgtttatg 8402335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 35198014 - 35198068
Alignment:
Q  1 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttag 55  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||    
T  35198014 taaggtggcgctggtttgaatgtcctaaatagagaagtgagcaaagtatttttag 35198068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 11421660 - 11421624
Alignment:
Q  156 atctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||| |||||||||||||||| |||||||||||    
T  11421660 atctgatggttgtgaagtgtttatgcacggtgcataa 11421624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 34369726 - 34369690
Alignment:
Q  156 atctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||| |||||||||||||||| |||||||||||    
T  34369726 atctgatggttgtgaagtgtttatgcacggtgcataa 34369690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 51420437 - 51420374
Alignment:
Q  129 cctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaa 193  Q
    |||||||||||||| |||||||| || |||||||| ||||||| |||||||| | | ||||||||    
T  51420437 cctaggattattactcgtgtataataaatctgatggttgtgaa-tgtttatgcaggatgcataaa 51420374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 48077711 - 48077857
Alignment:
Q  1 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnngtcaaaataaagatatacctctttccttt 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||          |||||||| ||||||||||||||||||||    
T  48077711 taaggtggtgctggtttgaatgtcctagagagagaagtgagcaaagcatttttaatgagag--gtttttttgtcaaaatgaagatatacctctttccttt 48077808  T
Q  101 attccttgatttggtgtagtttgagaagcctaggattattacacgtgta 149  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  48077809 attccttaatttggtgtagtttgagaagcctaggattattacacatgta 48077857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 85 - 191
Target Start/End: Original strand, 50563658 - 50563764
Alignment:
Q  85 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| ||||||||||||| |||||||||||||||| | |    
T  50563658 tatacctctttcctttattccttgatttggtgtagtttgagaaacctataattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagg 50563757  T
Q  185 gtgcata 191  Q
    |||||||    
T  50563758 gtgcata 50563764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 27764355 - 27764240
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||| ||||||||| || ||||| |||||    
T  27764355 ttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatctgatggttgcgaagtgtttatgcacggtgcat-aaggatttccttat 27764257  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  27764256 gcaccataacttttgcc 27764240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 4168473 - 4168387
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  4168473 ttgatttggtgtagtttgagaaacctaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 4168387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 637969 - 637882
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaa 193  Q
    |||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  637969 ttgatttggtgtagtttgagaagcctaaaattattacacatgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaa 637882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 22181195 - 22181281
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||| ||||||||| |||||| |||||||||||    
T  22181195 ttgatttggtgtagtttgagaaacctaggattattacacgtgtacactaaatctgatggttgtgaagtttttatgcacggtgcataa 22181281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 26447362 - 26447448
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  26447362 ttgatttggtgtaatttgtgaagcctagaattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 26447448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 36621651 - 36621737
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||| |||||||||||||||| |||||||||||    
T  36621651 ttgatttggtgtagtttaagaagcataggattattacacgtgtacattagatctgatggttgtgaagtgtttatgcacggtgcataa 36621737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 45256090 - 45255975
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    |||||||| |||||||||| |||||||||||||||||||||||| |||| |||||||  |||||||||||||||| ||||||||| || ||||| |||||    
T  45256090 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacactatatctgatagttgtgaagtgtttatgcacggtgcat-aaggatttccttat 45255992  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  45255991 gcaccataacttttgcc 45255975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 38485624 - 38485710
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||  |||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||| |||||||||||    
T  38485624 ttgatttaatgtattttgagaagcctaggattattacacgtgtacattagatctgatggttgtgaagcgtttatgcacggtgcataa 38485710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 51837041 - 51837115
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 180  Q
    |||||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||||||| ||||||    
T  51837041 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacattaaatctgatggttgtgaagtatttatg 51837115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 21097255 - 21097140
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    ||||||||||||| ||| | |||| ||| ||||||||||||||| ||||||||| ||| |||||||||||||||  ||||||||| || ||||| |||||    
T  21097255 ttgatttggtgtaatttaataagcttagaattattacacgtgtaaactagatctaatggttgtgaagtgtttatacacggtgcat-aaggatttccttat 21097157  T
Q  206 gtaggataacttttgcc 222  Q
    | | | |||||||||||    
T  21097156 gcacggtaacttttgcc 21097140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 6386516 - 6386565
Alignment:
Q  131 taggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 180  Q
    ||||||||||||||||||  |||| |||||||| ||||||||||||||||    
T  6386516 taggattattacacgtgtccactaaatctgatggttgtgaagtgtttatg 6386565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 1729604 - 1729652
Alignment:
Q  145 gtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaa 193  Q
    ||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  1729604 gtgtacactagatctgatggttgtgaagtgtttatgcacggtgtataaa 1729652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 29826606 - 29826669
Alignment:
Q  156 atctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttatgtaggataacttttg 220  Q
    |||||||| |||||||||| ||||| ||||||||| || ||||| ||||||||  ||||||||||    
T  29826606 atctgatggttgtgaagtgcttatgcacggtgcat-aaggatttccttatgtaccataacttttg 29826669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 5757523 - 5757416
Alignment:
Q  85 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacg 184  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||    
T  5757523 tatacctctttcctttattccttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacg 5757424  T
Q  185 gtgcataa 192  Q
    ||||||||    
T  5757423 gtgcataa 5757416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 32090714 - 32090606
Alignment:
Q  85 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacg 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || |||| |||||||| | |    
T  32090714 tatacctctttcctttattccttgatttggtgtagtttgagaagcctatgattattacacgtgtatactagatttgatggttctgaattgtttatgcagg 32090615  T
Q  185 gtgcataaa 193  Q
    |||||||||    
T  32090614 gtgcataaa 32090606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 46573450 - 46573536
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||    
T  46573450 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtgcataa 46573536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 30428988 - 30428873
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||| || ||||| |||||    
T  30428988 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaaatgtttatgcacggtgcat-aaggatttccttat 30428890  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  30428889 gcaccataacttttgcc 30428873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 33798046 - 33797966
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggt 186  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  33798046 ttgatttgatgtagtttgagaagtctaggattattacacgtgtatactagatctgatggttgtgaaatgtttatgcacggt 33797966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 46024142 - 46024027
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    |||||||  |||||||||||||| |||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||||||| || ||||||||| |    
T  46024142 ttgatttaatgtagtttgagaagtctaggattattacacgtgtacactatatctgatggttgtgaagtgtttatgcacggtgcat-aaggattttcttgt 46024044  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  46024043 gcaccataacttttgcc 46024027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 32090818 - 32090759
Alignment:
Q  1 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgaga 60  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32090818 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaggcatttttagtgaga 32090759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 15974886 - 15975001
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    ||||||||||||| ||||| ||||||| |||||||||| ||||| |||| || ||||| |||||||||||||||| ||||||||| || ||||| |||||    
T  15974886 ttgatttggtgtactttgataagcctaagattattacatgtgtacactaaatatgatggttgtgaagtgtttatgcacggtgcat-aaggatttccttat 15974984  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  15974985 gcaccataacttttgcc 15975001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 28396818 - 28396751
Alignment:
Q  125 gaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||| |||||||| |||||||||||    
T  28396818 gaagcctaggattattactcttgtacactagatctgatgattgtgaaatgtttatgcacggtgcataa 28396751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 12279740 - 12279641
Alignment:
Q  122 tgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttatgtaggataacttttgc 221  Q
    ||||| ||||||||| |||||||||||| ||| ||||| ||| ||||||||| |||||  ||||||||| |||||||| ||||||||  |||||||||||    
T  12279740 tgagaggcctaggatcattacacgtgtacactggatctaatggttgtgaagtctttatacacggtgcat-aatgatttccttatgtaccataacttttgc 12279642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 12279844 - 12279745
Alignment:
Q  122 tgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttatgtaggataacttttgc 221  Q
    ||||| ||||||||| ||||||||| || ||||||||| ||| ||||||||| |||||| |||||||||||| ||||| |||||| |  |||||||||||    
T  12279844 tgagaggcctaggatcattacacgtatacactagatctaatggttgtgaagtctttatgcacggtgcataaa-gatttccttatgcaccataacttttgc 12279746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 48690991 - 48690924
Alignment:
Q  125 gaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||| |||||||||||||||| ||||||| ||||| ||||||| |||||||| |||||||||||    
T  48690991 gaagcctatgattattacacgtgtacactagatttgatggttgtgaactgtttatgcacggtgcataa 48690924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 48691088 - 48691033
Alignment:
Q  125 gaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 180  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  48691088 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtctatg 48691033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 48305327 - 48305265
Alignment:
Q  130 ctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||||||| ||||||| |||||||| |||| |||| ||||||||||| |||||||||||    
T  48305327 ctaggattattatacgtgtacactagatccgatgtttgtaaagtgtttatgcacggtgcataa 48305265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 44141226 - 44141287
Alignment:
Q  131 taggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||||||||||||||| |||| ||| |||| |||||||||||||||| | |||||||||    
T  44141226 taggattattacacgtgtacactaaatcagatggttgtgaagtgtttatgcagggtgcataa 44141287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 5757599 - 5757566
Alignment:
Q  28 gagagagaagtgagcaaagcatttttagtgagag 61  Q
    |||||||||||||||||||||||||||| |||||    
T  5757599 gagagagaagtgagcaaagcatttttagcgagag 5757566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 15182016 - 15181820
Alignment:
Q  1 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagagannnnnnnnn---------gtcaaaataaagatatacct 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||| |||||||||      
T  15182016 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagaggttttttttttttttttttgtcaaaatgaagatatac-- 15181919  T
Q  92 ctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcata 191  Q
     |||||| ||||| |||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||||||||||| | ||||||||    
T  15181918 -tttcctatattc-ttgatttggtgtagtttgagaaacctaagattattacacgtgtacactagatctgatgcttgtgaagtgtttatgcagggtgcata 15181821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 32987395 - 32987510
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| || ||||| |||||    
T  32987395 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcat-aaggatttccttat 32987493  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  32987494 gcaccataacttttgcc 32987510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 39022090 - 39021975
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||| || ||||| |||||    
T  39022090 ttgatttggtgtagtttgagaagcctaggattattacacatgtacactagatctgatgattgtgaagtgtttatgcacggtgcat-aaggatttccttat 39021992  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  39021991 gcaccataacttttgcc 39021975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 7058229 - 7058114
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||| | |||| |||||    
T  7058229 ttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatcggatggttgtgaagtgtttatgcacggtgcataagt-atttccttat 7058131  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  7058130 gcaccataacttttgcc 7058114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 4836651 - 4836737
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  4836651 ttgatttggtgtagtttgaaaagcttaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 4836737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 4842096 - 4842182
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  4842096 ttgatttggtgtagtttgaaaagcttaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 4842182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 7614183 - 7614097
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||| | |||||||||    
T  7614183 ttgatttggtgtagtttgagaagcctatgattattacacgtgtacattagatctgatggttgtgaagtgtttatgcatggtgcataa 7614097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 8550619 - 8550533
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||||||||| |||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  8550619 ttgatttggtgtaatttgagaagcttatgattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 8550533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 15260801 - 15260887
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||| |||||||||||||||| |||||||||||    
T  15260801 ttgatttggtgtagtttgagaagccttggattattaaacgtgtacactagatttgatggttgtgaagtgtttatgcacggtgcataa 15260887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 1208805 - 1208709
Alignment:
Q  125 gaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttatgtaggataacttttgcc 222  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||| ||||||||||| ||||||||| || ||||| |||||| |  ||||||||||||    
T  1208805 gaagcctaggattattacacgtgtacactagatcttatggttgtaaagtgtttatgcacggtgcat-aaggatttccttatgcaccataacttttgcc 1208709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 2750140 - 2750101
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacg 145  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  2750140 ttgatttggtgtagtttgagaagtctatgattattacacg 2750101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 1671891 - 1671850
Alignment:
Q  133 ggattattacacgtgtatactagatctgatgattgtgaagtg 174  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  1671891 ggattattacacgtatacactaaatctgatgattgtgaagtg 1671850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 41451171 - 41451135
Alignment:
Q  156 atctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  41451171 atctgatgattgtgacgtgtttatgcacggtgcataa 41451135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 106 - 220
Target Start/End: Complemental strand, 50754121 - 50754008
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| || ||||| |||||    
T  50754121 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcat-aaggatttccttat 50754023  T
Q  206 gtaggataacttttg 220  Q
    |||  ||||||||||    
T  50754022 gtaccataacttttg 50754008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 52987600 - 52987686
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||    
T  52987600 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa 52987686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 51362388 - 51362503
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||||||| || ||||| |||||    
T  51362388 ttgatttggtgtagtttgagaagcctaggattattacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcat-aaggatttccttat 51362486  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  51362487 gcaccataacttttgcc 51362503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 23699464 - 23699369
Alignment:
Q  85 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 180  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||    
T  23699464 tatacctctttcctttattccttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatg 23699369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 23717919 - 23717824
Alignment:
Q  85 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 180  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||    
T  23717919 tatacctctttcctttattccttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatg 23717824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 23736375 - 23736280
Alignment:
Q  85 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 180  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||    
T  23736375 tatacctctttcctttattccttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatg 23736280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 8718216 - 8718101
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||| |||||||||||||||| || ||||| |||||    
T  8718216 ttgatttggtgtagtttaagaagcctaggattattacacatgtacactagatctgatggttgtgaagtatttatgtacggtgcat-aaggatttccttat 8718118  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  8718117 gcaccataacttttgcc 8718101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 9070103 - 9069988
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||| |||||||||||||||| || ||||| |||||    
T  9070103 ttgatttggtgtagtttaagaagcctaggattattacacatgtacactagatctgatggttgtgaagtatttatgtacggtgcat-aaggatttccttat 9070005  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  9070004 gcaccataacttttgcc 9069988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 106 - 206
Target Start/End: Original strand, 16277364 - 16277463
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||||| |||||||||||| ||||| |||||    
T  16277364 ttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatatgatggttgtgaagtgtttatgcacggtgcataaa-gatttccttat 16277462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 19385265 - 19385381
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    |||||||| ||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||||| ||||||||| || ||||| |||||    
T  19385265 ttgatttgatgtagtttgagaagcctagaattattacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcat-aaggatttccttat 19385363  T
Q  206 gtaggataacttttgcct 223  Q
    | |  |||||||||||||    
T  19385364 gcaccataacttttgcct 19385381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 39099312 - 39099226
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | |||||| |||||||||||    
T  39099312 ttgatttagtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaaatatttatgcacggtgcataa 39099226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 7045250 - 7045336
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||  |||||||||||    
T  7045250 ttgatttgatgtagtctgagaagcctacgattattacacgtgtacactagatctgatggttgtgaagtgtttatacacggtgcataa 7045336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23699567 - 23699507
Alignment:
Q  1 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagag 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23699567 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagtatttttagtgagag 23699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23718022 - 23717962
Alignment:
Q  1 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagag 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23718022 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagtatttttagtgagag 23717962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23736478 - 23736418
Alignment:
Q  1 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagag 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23736478 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagtatttttagtgagag 23736418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 23755415 - 23755351
Alignment:
Q  85 tatacctctttcctttattccttgatttggtgtagtttgagaagcctaggattattacacgtgta 149  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  23755415 tatacctctttcctttattccttgatttgatgtaatttgagaagcctaggattattacacgtgta 23755351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23755518 - 23755458
Alignment:
Q  1 taaggtggcgctggtttgaatgtcctagagagagaagtgagcaaagcatttttagtgagag 61  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23755518 taaggtggcgctggtttgaatgttctagagagagaagtgagcaaagcatttttagtgagag 23755458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 17627197 - 17627255
Alignment:
Q  122 tgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatg 180  Q
    |||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  17627197 tgagaaacctagaattattacacgtgtacactagatctgatggttgtgaagtgtttatg 17627255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 13728 - 13607
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||| || || ||||| |||||    
T  13728 ttgatttggtgtagtttgagaagcgtaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacggtggat-aaggatttccttat 13630  T
Q  206 gtaggataacttttgcctccact 228  Q
    | |  |||||||||||| |||||    
T  13629 gcaccataacttttgccaccact 13607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 25182 - 25297
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttat 205  Q
    |||||||||||||||||||||| |||| |||||| ||||||||| |||| |||||||| |||||||||||||||| ||||||||| || ||||| |||||    
T  25182 ttgatttggtgtagtttgagaaacctaagattatgacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcat-aaggatttccttat 25280  T
Q  206 gtaggataacttttgcc 222  Q
    | |  ||||||||||||    
T  25281 gcaccataacttttgcc 25297  T

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Target: scaffold0194 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 27722 - 27636
Alignment:
Q  106 ttgatttggtgtagtttgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataa 192  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||  |||||||||||||||| ||||| |||||    
T  27722 ttgatttggtgtagtttgagaagcctagaattattacacgtgtacactagatcttatagttgtgaagtgtttatgcacggtacataa 27636  T

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Target: scaffold0337 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 7116 - 7045
Alignment:
Q  122 tgagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaa 193  Q
    |||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  7116 tgagaaacctaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacggtgtataaa 7045  T

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Target: scaffold0544 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 10642 - 10739
Alignment:
Q  123 gagaagcctaggattattacacgtgtatactagatctgatgattgtgaagtgtttatgtacggtgcataaatgattttcttatgtaggataacttttgc 221  Q
    ||||| |||||||||||||||  || | ||||||||||||| |||||||||||||||| |||||| || || ||||| |||||| |  |||||||||||    
T  10642 gagaaacctaggattattacatatgcacactagatctgatggttgtgaagtgtttatgcacggtgtat-aaggatttccttatgcaccataacttttgc 10739  T

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